Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1549 ATGGCAGCATTGAAACTTTGTATGAAGCTTCGATCCTCAAACCTTCTCTCTCGCTCTTCCAATCTTCTCTCCATTCACTTGCAGTTGCAGCACTCAACTCCTTCCCTCACTCGAAAGATAAGCATAGATGCACGGAGTGCTGCTACCCAGCTTAATAGTTCTGGCCTTTTGAGGACTCAGGGCCTTATTGGAGGGAAATGGAGCGATGCTTATGATGGGAAAACAATAAAGGTTTACAATCCAGCAACGGGTGAATCCATAACAGATGTTGCATGCATGGGTGAAAGAGAAACGAAAGATGCAATTTCTTCAGCCTATGATGCATTTAGATCATGGAGCAAAATCACTGCTGCTGAGAGGAGCAAATATCTGAGGAAATGGTATGATTTGCTAATGGCACATAAAGAAGAGCTAGCACAGCTTATGACCTTGGAGCAAGGGAAACCTCTTAAAGAATCTTTGGGCGAGGTAAACTATGGGGCTGCCTTTATTGAGTTTGCATCTGAGGAGGCAAAACGTATATATGGTGATATAATTCCTTCACCTCTATCTGATCGGCGGTTATTTGTTTTAAAGCAGCCTGTAGGGGTTGTAGGTGCAATCACACCATGGAACTTTCCCCTGGCTATGATTACGCGAAAGGTTGGTCCAGCCCTAGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAACTTACGCCTCTCACTGCTTTAGCTGCTGCAGAACTCTCTATTCAAGCTGGAATACCTGCGGGTGTTGTGAACGTGGTTATGGGAAATGCTCCTGAAATTGGGGACACTTTAGTTGCAAGTCCACAGGTACGCAAGATCACATTCACTGGCTCAACAAATGTTGGAAAGAAATTGATGGCAGGTTCTGCCGAGACAGTAAAAAAAGTATCCCTGGAACTTGGTGGCAATGCACCTTGCATAGTTTTTGATGATGCTGACCTGGATGTTGCAGTAAAAGGAACTATTGCAGCAAAGTTCCGTAATAGTGGACAAACATGTGTTTGTGCTAATAGAATTCTCGTGCAAGAAGGTATATATGACAAATTTGCAAAGGCTTTGATTGATGCTGTCCAGAATATGAAAGTCGGGGATGGTTTTAGTGAAGGTGTTGTTCAGGGCCCTCTGATCAATGAAGCTGCTGTCAAAAAGGTCGAGACCTTACTTCACGATGCTACATCAAAGGGGGCTAAAATAGTTCTTGGGGGTAAAAGACATAGCCTTGGATTATCCTTTTACGAACCAACAGTCGTCCGTGATGTCAGTAATGACATGCTCATATCAAGAGAGGAAGTTTTTGGACCTGTCGCGCCCCTTTTGAAGTTCAAAACTGAAGAGGATGCTATTGGAATTGCTAACAACACTAATGCAGGTTTGGGTTCATACGTATTTACTAACAGTATCCAACGCTCATGGCGTGTTGCTGAGGCTCTTGAATATGGACTTGTGGGTGTTAATGAAGGAGTAATTTCAACTGAGGTGGCTCCGTTTGGCGGTGTCAAACAATCTGGCCTCGGAAGAGAAGGCTCCAAATATGGGATGGATGATTATTTGGAGATAAAGTATGTGTGCATGGGAAACATGAACAAAAATTGA 1605 0.438 MAALKLCMKLRSSNLLSRSSNLLSIHLQLQHSTPSLTRKISIDARSAATQLNSSGLLRTQGLIGGKWSDAYDGKTIKVYNPATGESITDVACMGERETKDAISSAYDAFRSWSKITAAERSKYLRKWYDLLMAHKEELAQLMTLEQGKPLKESLGEVNYGAAFIEFASEEAKRIYGDIIPSPLSDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSIQAGIPAGVVNVVMGNAPEIGDTLVASPQVRKITFTGSTNVGKKLMAGSAETVKKVSLELGGNAPCIVFDDADLDVAVKGTIAAKFRNSGQTCVCANRILVQEGIYDKFAKALIDAVQNMKVGDGFSEGVVQGPLINEAAVKKVETLLHDATSKGAKIVLGGKRHSLGLSFYEPTVVRDVSNDMLISREEVFGPVAPLLKFKTEEDAIGIANNTNAGLGSYVFTNSIQRSWRVAEALEYGLVGVNEGVISTEVAPFGGVKQSGLGREGSKYGMDDYLEIKYVCMGNMNKN 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1549 534 TIGRFAM SSADH: succinate-semialdehyde dehydrogenase 78 524 IPR010102 GO:0009013|GO:0009450
Lal11g1549 534 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 306 495 IPR016163 GO:0016620
Lal11g1549 534 SUPERFAMILY ALDH-like 54 532 IPR016161 GO:0016491
Lal11g1549 534 CDD ALDH_F5_SSADH_GabD 78 528 - -
Lal11g1549 534 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 302 309 IPR029510 GO:0016491
Lal11g1549 534 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 73 520 IPR016162 GO:0016491
Lal11g1549 534 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 54 531 - -
Lal11g1549 534 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 54 531 - -
Lal11g1549 534 Pfam Aldehyde dehydrogenase family 69 526 IPR015590 GO:0016491
Lal11g1549 534 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 330 341 IPR016160 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1549 Lal-Chr11 18586702 18599321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1549 22 534 Aldehyde Dehydrogenase Gene Family AT1G79440 77.583 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1549 K17761 - gmx:100808318 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1549 11 18586702 18599321 Lal11g1549 11 18586702 18599321 ECH