Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1519 ATGGCGAAACCTGGGCGACTTCGTCGTTCACCATCATCCGCTTCCGTTTCGGGTTCATCCTCTCGATCTTCCTCACGTTCTCGCTCCTCTTCTCGTTCTCGCTCCAGATCCTTCTCTTCCTCTTCTTCCTCACCCTCTCGCAGCCCTATTCGATCCTCTCCTTCTCACAGAAAAAAGAGTCCTGCCGAATCAGCTAGAAGAGGTCGATCTCCTCCACCCTCATCTAAAAGAATTTCTCCTCCAAGGAAACCGTCTCCTATACGTGAATCACTTGTTCTTCATGTAGAAAAACTAAGCAGGAATGTCAATGAAGGCCATTTGAAAGAAATTTTTGGTAACTTTGGTGAGGTTGTAAGTGTGGAGTTGGCAATGGACCGAGCTGTTAATCTTCCAAAAGGTTATGGATATGTGCAATTCAAGACAAGAGATGATGCTGAAAAAGCATTGTCGTACATGGATGGTGCCCAAATAGATGGCAACATCGTTAAGGCAAGATTTACTCTACCTCCACGACAGAAAGTTTCACCGCCCCCAAAGGCCTCTGCTTTAGCTCTTAAGAGAGATGCACCTAAGACTTATAATGCTAGTGCAGATGCTGAAAATGATGGGTCAAAGCGTCAAAGAGAATCATCTCCGCGTAGAAAACCTCTCTCACCCAGAAGAAGGTCTCCTGTGTCTCGAAGAGCTGGATCGCCAAGAAGACCAGATTCTCCTCGCCGCCGTGCAGATTCTCCTGTTCGTCGTCGATTAGACTCTCCTCCTTATCGTCGTGGAGACACACCTCCTAGGAGGAGGCCCGTGTCTCCTGGAAGAGGCCGTTCTCCATCTCCACCAAGGCGCCCTAGATCTCCTGCAAGAGTCTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGCAGGCGTTCTCCTCCTCCCCTAAGGCGCCGTTCACCACCTAGACGAGCTCGCAGTCCTCCGAGAAGATCTCCAATTGGTCGTAGGCGCAGTCGCTCTCCAGTACGTAGGTCTGCACGGTCACGTTCGAGATCATTCTCACCTCGAAGGGGTCGTCCACCTGTGAGACGTGGGAGGTCATCATCCTACTCTGATTCACCAAGTCCACGCAGGGTCCGAAGATCAAAGAGCCGCAGTCCAAGAAGGCCTTTGAGAGGAAGAGGCAGTAGCAACAGCAGCAGTAGCAGTTCACCACTCCCACCACCACCACCGCCTCCACCTCGCAAACCATAG 1224 0.5131 MAKPGRLRRSPSSASVSGSSSRSSSRSRSSSRSRSRSFSSSSSSPSRSPIRSSPSHRKKSPAESARRGRSPPPSSKRISPPRKPSPIRESLVLHVEKLSRNVNEGHLKEIFGNFGEVVSVELAMDRAVNLPKGYGYVQFKTRDDAEKALSYMDGAQIDGNIVKARFTLPPRQKVSPPPKASALALKRDAPKTYNASADAENDGSKRQRESSPRRKPLSPRRRSPVSRRAGSPRRPDSPRRRADSPVRRRLDSPPYRRGDTPPRRRPVSPGRGRSPSPPRRPRSPARVSPRRMRGSPGRRRSPPPLRRRSPPRRARSPPRRSPIGRRRSRSPVRRSARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRRVRRSKSRSPRRPLRGRGSSNSSSSSSPLPPPPPPPPRKP 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1519 407 Gene3D - 9 175 IPR012677 -
Lal11g1519 407 SUPERFAMILY RNA-binding domain, RBD 24 166 IPR035979 GO:0003676
Lal11g1519 407 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 1 388 - -
Lal11g1519 407 CDD RRM_RNPS1 93 165 IPR034201 -
Lal11g1519 407 PANTHER BNAA09G56240D PROTEIN 1 388 - -
Lal11g1519 407 MobiDBLite consensus disorder prediction 284 353 - -
Lal11g1519 407 MobiDBLite consensus disorder prediction 201 216 - -
Lal11g1519 407 MobiDBLite consensus disorder prediction 232 266 - -
Lal11g1519 407 MobiDBLite consensus disorder prediction 393 407 - -
Lal11g1519 407 SMART rrm1_1 92 165 IPR000504 GO:0003723
Lal11g1519 407 MobiDBLite consensus disorder prediction 1 90 - -
Lal11g1519 407 MobiDBLite consensus disorder prediction 168 407 - -
Lal11g1519 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 169 IPR000504 GO:0003723
Lal11g1519 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 161 IPR000504 GO:0003723
Lal11g1519 407 MobiDBLite consensus disorder prediction 10 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1519 Lal-Chr11 18359526 18364588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1519 93 166 Eukaryotic Initiation Factors Gene Family AT2G23350 35.135 1.19e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1519 K14325 - gmx:100783566 243.047