Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1479 ATGAAGATTCAGTGTAACGTGTGTGAATCTGCAGAGGCCAAGGTTCTGTGTTGTCCTGATGAAGCAGCGTTGTGTTGGGAATGTGATGAGAAAGTTCATACTGCTAACAAACTTGCCAGCAAACACCAAAGAGTTCCTCTTTCTATGTCTTCTTCTCATATGCCAAAATGTGATATTTGTCAGGAAGCATTTGGCTATTTCTTCTGTCTAGAGGACCGGGCTTTACTATGCAGAAATTGTGATTTGGCAATACACACTGCTAATGCTTATGTCTCTGGTCATCAGAGGTTTCTCCTCACTGGTGTAAGAGTAGGCCTTGAAGCTACTGATCCTGGTGCTTCCTCGAGTTCTTTGAAGTCGGATTCTGGGGACAAAGTTTCTGATACGAAGTCTGCTTCCATATGTAAAAAGGTTGCTGCAATGCCTCAGTCATCAGATTACAATGAAATGGTACCTGTTGAAGTTGGAAGAATTGAGGAGTTTACACCAGCTAAGGTGTCTTATGGTGGTGGTTCTACTGCTGGAAACATGTCACAGTGGTCGTTTGATGAACTCCTTGGCCTCGATGAATTCATTCAGAATTATAAATACACGGAAGGGTCATCAAAGGCAGATAGTGGGAAGCTTGAAGATTCTGATTCTCCAGTTTTAAGATCCATTGAAGAGGAAATGAAGGAAGGCGACGACTACTTAGGACAAGTTCCGGATTCATCCTGGAAAGTTCCTCAGATTCCATCCCCTCCTACAGCTTCAGGGCTACACTGGCCAAAAGTCCTTCAATATTCATCTGATAGTGCAATGTTTGTTCCTGACATATCCTTTTCTCACAACATGCAACAGCATCAGAATAGTAGTATTTTTTCAAGGAGGAGGAGGCATCCTTAA 885 0.4271 MKIQCNVCESAEAKVLCCPDEAALCWECDEKVHTANKLASKHQRVPLSMSSSHMPKCDICQEAFGYFFCLEDRALLCRNCDLAIHTANAYVSGHQRFLLTGVRVGLEATDPGASSSSLKSDSGDKVSDTKSASICKKVAAMPQSSDYNEMVPVEVGRIEEFTPAKVSYGGGSTAGNMSQWSFDELLGLDEFIQNYKYTEGSSKADSGKLEDSDSPVLRSIEEEMKEGDDYLGQVPDSSWKVPQIPSPPTASGLHWPKVLQYSSDSAMFVPDISFSHNMQQHQNSSIFSRRRRHP 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1479 294 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lal11g1479 294 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lal11g1479 294 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Lal11g1479 294 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Lal11g1479 294 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lal11g1479 294 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 293 - -
Lal11g1479 294 CDD Bbox1_BBX-like 5 47 - -
Lal11g1479 294 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 293 - -
Lal11g1479 294 CDD Bbox1_BBX-like 56 99 - -
Lal11g1479 294 Gene3D Classic Zinc Finger 1 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1479 Lal-Chr11 18050217 18053724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1479 1 292 C2C2-CO-like Transcription Factor Family AT1G78600 47.401 2.78e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lal11g1479 zf-B_box 5.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1479 - - gmx:100790959 466.077