Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1469 ATGAAGAGGAACACTTTGAGCACAAGTACTTATGCTAACAACTACCACAGCAACAAGAATCAAATGGTGATGAAAGAGTGTTTGGATTGCAACAACTCTCATAATGGAGAGGATGATCACTACATGAATGGTTTCCCATGGCCACCAAGATCATACACTTGTAGCTTCTGCCGGAAGGAATTCAAGTCTGCTCAGGCACTTGGTGGCCACATGAATGTGCATAGAAGGGATAGAGCAAGGTTGAGGCAATCATCACCTCCACCAACTCCAACTAGTGATCATCATCATGGTCATGGTCATGCTCATAGTCAAGGCCATCCTATGCTGAACCTAAACCTAAACCCTAACTTCTCATCATCAACCTCATCTAATAATTTGTCCTTTTTGCCACCATCATGGGCTTCTTCTCATTTTTCAACTCACAAATCACCTGTCACTTCCACATTACCCTTGCTTGTTCCTCCCACCACCACTACTACTACTCCATCTTCTTCTTATTCTTCTCCATCCTCTGCTTCACCTTCTGAGTTGAAGAGATGGGTTGCTGTGGATGGTATCTTATTGAAGAACCCTTTGACCACAAAGACCTCTGAGACAACAAAATCAAATATTGGAGAAGATGCAGGGTGTAAAATGGTGAAGAAGAATGAAATTCTTAGGGTGGACTTGGAGATTGGTTTGCCTAGAGAATATGATTTGGATCTGGAGCTTCGTTTGGGTAATTGCTCTTAG 732 0.4262 MKRNTLSTSTYANNYHSNKNQMVMKECLDCNNSHNGEDDHYMNGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSSPPPTPTSDHHHGHGHAHSQGHPMLNLNLNPNFSSSTSSNNLSFLPPSWASSHFSTHKSPVTSTLPLLVPPTTTTTTPSSSYSSPSSASPSELKRWVAVDGILLKNPLTTKTSETTKSNIGEDAGCKMVKKNEILRVDLEIGLPREYDLDLELRLGNCS 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1469 243 MobiDBLite consensus disorder prediction 68 116 - -
Lal11g1469 243 PANTHER OS07G0101800 PROTEIN 9 241 - -
Lal11g1469 243 Pfam C2H2-type zinc finger 52 76 - -
Lal11g1469 243 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 9 241 - -
Lal11g1469 243 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Lal11g1469 243 MobiDBLite consensus disorder prediction 144 174 - -
Lal11g1469 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Lal11g1469 243 SUPERFAMILY beta-beta-alpha zinc fingers 49 78 IPR036236 -
Lal11g1469 243 SMART c2h2final6 52 74 IPR013087 -
Lal11g1469 243 Gene3D Classic Zinc Finger 48 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1469 Lal-Chr11 17969116 17969847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1469 35 240 C2H2 Transcription Factor Family AT3G23130 37.327 8.76e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal11g1469 zf-C2H2_6 1.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1469 - - var:108333719 182.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0379 20 3031166 3031873 Lal11g1469 11 17969116 17969847 LSH