Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1460 ATGTTACTCAGCAAAGTAGCAGAGGATTTATGTCATGATAACATTGAAGGATCCAATGAAGAAAGACAGATTTTTGCAGAGGTCTTTTCTGGTAATGACATTTTTCAATCTAGTCAGAGGTGTCTTGTTTCTGGAGTTATCAACTTTGAATGTGAGTCCAATAAACAAACATTTAAATCATTCTGCTCTAGTGATGAAAACACAGTTGTAATGCGACCCTTGTCTTCAAGACTTATGCATCCTGACGAGGACCTTAATGCAATTCAGCATTCCAAAGAGACTGCTCTAGGGTGTATGCCAGAGAGTTTGATTTGTGATGACCAAAATGACGAGGATATGAATGCAAAACGTATGAATTTTTCTCTACACGGACTTCCTTGTAGTATATCTAATTCAGGAAATGTTTTGAGTTCATCAGGACTTTCAAAAGTTGTTTCTAACCTGTCTTGTGCTGCTACAGACTGTGATAGTGAACCATTTCTATTCCGTTTAGTTGAATCATCGAAGCATGGTGTGATATCTAGTCAATATCTGTTGAAGCATAACGTGTTACAGAATAAAGTAGTTGCCAAGGATGATGTAGACGTTACAAATTGTAAATCGACAACTGCAGGTGGGAATGTTGCAAAAGAGATGTCTGTAAGTAAAGTGGTTGCTTCTCCTGTTTCCCAGGAGAGCTTTGCAAACAAGCTTGTAGTTACAAATCCATCAATTACTGTTGTGGATAAGCCTGGGTCTCCTTTACATCCTGAGGAAATGTCGAAAGATTTTTTATCTTCTGAAATGGATATCTCAAATTCACCCTCAAAGCTATACCAAAAGGACCCTCGTACTTCTCTGCAATTTTATGTTAATGAGTTGCTTACGTCGGCCGGATGGTCTATTGAGAAGCGCCATCGACCTAGTAGGCGTTACATGGATTCAGTTTATAGAACACCAAAGGGAAAACCTGTTCGGGAATTTACTAAAGCTTGGAGATTATGTGGTCAGCTTTTGTCTGTTGAAAAATGCAATTTAATGTATGAATATTGTAAGGAATGGACTGATATTAGTCAATTCTGGTCTGATTTATCCAGTTCACTGATAAATGTTGAAAAAACAAGGAACCAATCAGAGCCTGTTGCTATGTTGGCTCATCAATGGTGGCTTTTGGATCCTTTTGTAGTAGTCGTGTTTCTTGATAGAAAGATTGGTGCCTTGAAAAAGGGAGAGATAGTGAAAGCCACTTGGAGTTTAGTTACTAGCAAGTATAAGATGGCATGTGCTCCCATTGGAACAGCTTGGGAGGATACTTCTGTTGCTCATTTTGATCCAAACCACAACCAAGCCTTTCACTGTGATTATTCTACTGGAATTGCAAGCCCTATTCCACAGTCCGAATGTTGTGATGAAGATGGTAGGAAAATGTCATTAACTTCTGAAGTTGAGCCAGATAACACATGCTCTGCCACCAATGTTCTTAAAAAGAAAATGCGGAGAAAATGCAAAAGGGTTTCTGAAATCAATCTTAGTATGTCATACTATAGTGACATGCTTGACTCAACTGTTACTGACCCGGTGCAGCCACTGAATGGTGAGGCATGTGATAATCAGTTAGCATTGATAGAGGACCAGGATCATCTAGTTGACAGTGCAAGAAAGAAAAGAAGCTGCAGGAAGTTATCATCTGTCAATGCATTCGAACAAAATATTATAAAAGCAAACAACTCCATGACTGGAACGAATAAGTCCAAAAAATGCAAGATTAAAGATGATGATCTGTTGGTGTCAGCAATATTCAGGAATAAGGACTTCAGCCCAAAGACAACCCGAGGTAATTCTAGAGGTAAATCCTGCAAATCTAGAGTCCAAAGAAAGCTTAAAAGCAAAAAAGGTCGTTGCAGGTTGCTACCAAGGAACCCTTGTAATGGAGGGAAGCACAATAAGGATGGCAAGTGGTATCATTTGAGGGCAAGGACAGTCTTGTCCTGGTTGATTGAGAATGGGATAATACGCTTAAATGATATGATTCAATACCGAAACCCTAAAGATAATGCCGTCATTAAGGATGGTAGGATAACCAAAGATGGTATTATTTGCAAGTGTTGTGGTAAGGTGCATACATTGTCAGAGTTCAAGTTTCATGCTGGGTTCTCACTGAATCGCCCCTGCTTGAATCTTTTCATGGGATCCGGTGAGCCCTTTACACTGTGCCTCCTTCAAGCTTGGTCAGATGAATACAAAGCCAGGAAAAGTCAGAATCAAGCTGTTAAAGTTGATAACGATGATAGAAATGATGACTCATGCGGGTTGTGTGGTGAGGGGGGTGAGCTGATATGTTGTGATAACTGCCCATCTACTTTTCATCTGACTTGTTTATCGACTCAGGAGATCCCTGATGGCAACTGGTACTGCACATACTGCACTTGTCGGATATGTGGAGATTTGGTCATTGATAAAGAGGCGTCGGATGCTTATGGTGCTTTGCAATGTGCACAGTGTGAACATAAATATCATCAGAAATGCCTGAAAGCAAGAGATCAACAAGAAGTGATAGTATCAGACACTTGGTTTTGTGGGCAGAGTTGTCAGGAGGTATACACTGGTCTCCAATCTCAGACGGGGTTAGTTAATCAAGCTGCTGATGGCTTCTCATGGATGCTTCTTAAATGCATCCACGATGACCAAAAGTGTCTTTCTGCTCAATGGTTTGCCCTGAAGGCAGTATGCAATACAAAATTAGCTGTTGCCCTTACCATCATGGAGGAGTGTTTTTTGTCGATGTTGGATCCGAGAACAGGCATACACATGATACCCCAAGTTTTATACAATTGGGGGTCTGATTTTACTCGCCTGAATTTTCAAGGGTTTTACACTGTGGTATTGGAGAAACAGGATGTGTTAATATCTGTAGCATCTGTAAGGGTGCATGGAACTACAGTTGCAGAGATGCCTCTAATTGCAACTTGCAGTCAGTATCGTCGGCAGGGAATGTGTCGACTCCTTGTGAGTGCAATTGAAGAGATGTTAATATCTATAAAGGTAGAAAAGCTTGTGATAGCAGCCATTCCAGATTTGATGGAAACATGGACTAAGGGCTTTGGATTCATGCCTGTGGATGACATTGAAAAGCAAAGATTGAAGAAAGTGAACTTGATGGTTTTTCCTGGGACAGTGTTACTTGAAAAACCCTTGTACCAGAAGGAGAATACTGAAGATATCAGCTCCGAAGGAATGGTCGCGGCCGAATCATTGCTGGAAGATGTTGGAAACTTATCTACTGACAAAGTTGGTGCCGAGTCAGAATCTGAACCTGTGGACATTGAGAATCACCTAGGCTGCGAAGCTGGCAGTGAAGCGATCAAAGTCGATAGTGAGCAGCAAAATACAAATGATAATGAGCAAATAATCCAGTTAACAGTGTCAGGTGGCTCAGGCAAATCTAATGAAGTATACAACATGCAGGAATCTGGAATGAACAAGGAAATGCAGATGGCAATCGAGTCGGTACAGAAATCGGGTGACAGCCGTTGTGCTAACAAAGATGGTGCCGAATCAGATGTAAAAACTGTCGAGGACAAGAATATCGAAATAGGTGAAGTTCAGGAAAATGCTTTGCAGGACCATTTTTCAAATTTGTCCTGCAGAACATCTTTAGGTAGCAATTTTGACATGGTTTCCAATATTGAATGCCGGGCTATGTATGATGAAACAGCTTTTTTGGAACAGCATTTGCAAATTCTGCAAGCTGAATCACAAGTTGAAAGAAAGTAG 3753 0.4066 MLLSKVAEDLCHDNIEGSNEERQIFAEVFSGNDIFQSSQRCLVSGVINFECESNKQTFKSFCSSDENTVVMRPLSSRLMHPDEDLNAIQHSKETALGCMPESLICDDQNDEDMNAKRMNFSLHGLPCSISNSGNVLSSSGLSKVVSNLSCAATDCDSEPFLFRLVESSKHGVISSQYLLKHNVLQNKVVAKDDVDVTNCKSTTAGGNVAKEMSVSKVVASPVSQESFANKLVVTNPSITVVDKPGSPLHPEEMSKDFLSSEMDISNSPSKLYQKDPRTSLQFYVNELLTSAGWSIEKRHRPSRRYMDSVYRTPKGKPVREFTKAWRLCGQLLSVEKCNLMYEYCKEWTDISQFWSDLSSSLINVEKTRNQSEPVAMLAHQWWLLDPFVVVVFLDRKIGALKKGEIVKATWSLVTSKYKMACAPIGTAWEDTSVAHFDPNHNQAFHCDYSTGIASPIPQSECCDEDGRKMSLTSEVEPDNTCSATNVLKKKMRRKCKRVSEINLSMSYYSDMLDSTVTDPVQPLNGEACDNQLALIEDQDHLVDSARKKRSCRKLSSVNAFEQNIIKANNSMTGTNKSKKCKIKDDDLLVSAIFRNKDFSPKTTRGNSRGKSCKSRVQRKLKSKKGRCRLLPRNPCNGGKHNKDGKWYHLRARTVLSWLIENGIIRLNDMIQYRNPKDNAVIKDGRITKDGIICKCCGKVHTLSEFKFHAGFSLNRPCLNLFMGSGEPFTLCLLQAWSDEYKARKSQNQAVKVDNDDRNDDSCGLCGEGGELICCDNCPSTFHLTCLSTQEIPDGNWYCTYCTCRICGDLVIDKEASDAYGALQCAQCEHKYHQKCLKARDQQEVIVSDTWFCGQSCQEVYTGLQSQTGLVNQAADGFSWMLLKCIHDDQKCLSAQWFALKAVCNTKLAVALTIMEECFLSMLDPRTGIHMIPQVLYNWGSDFTRLNFQGFYTVVLEKQDVLISVASVRVHGTTVAEMPLIATCSQYRRQGMCRLLVSAIEEMLISIKVEKLVIAAIPDLMETWTKGFGFMPVDDIEKQRLKKVNLMVFPGTVLLEKPLYQKENTEDISSEGMVAAESLLEDVGNLSTDKVGAESESEPVDIENHLGCEAGSEAIKVDSEQQNTNDNEQIIQLTVSGGSGKSNEVYNMQESGMNKEMQMAIESVQKSGDSRCANKDGAESDVKTVEDKNIEIGEVQENALQDHFSNLSCRTSLGSNFDMVSNIECRAMYDETAFLEQHLQILQAESQVERK 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1460 1250 PANTHER PHD FINGER PROTEIN 12 1 442 IPR042163 GO:0003714|GO:0045892
Lal11g1460 1250 PANTHER PHD FINGER PROTEIN 12 478 1236 IPR042163 GO:0003714|GO:0045892
Lal11g1460 1250 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 912 1035 IPR016181 -
Lal11g1460 1250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 804 861 IPR013083 -
Lal11g1460 1250 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 912 1059 IPR000182 GO:0016407
Lal11g1460 1250 PANTHER INCREASED DNA METHYLATION 1 478 1236 - -
Lal11g1460 1250 PANTHER INCREASED DNA METHYLATION 1 1 442 - -
Lal11g1460 1250 ProSiteProfiles Zinc finger PHD-type profile. 759 804 IPR019787 -
Lal11g1460 1250 Gene3D - 934 1045 - -
Lal11g1460 1250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 752 803 IPR013083 -
Lal11g1460 1250 SMART PHD_3 761 802 IPR001965 -
Lal11g1460 1250 SMART PHD_3 803 857 IPR001965 -
Lal11g1460 1250 SUPERFAMILY FYVE/PHD zinc finger 748 802 IPR011011 -
Lal11g1460 1250 Pfam Tify domain binding domain 684 734 IPR032308 -
Lal11g1460 1250 CDD PHD1_AIRE 762 801 - -
Lal11g1460 1250 Pfam PHD-finger 762 803 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1460 Lal-Chr11 17898784 17907627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1460 1 1060 PHD Transcription Factor Family AT3G14980 42.238 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal11g1460 TDBD 2.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1460 - - lang:109334132 2280.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1460 11 17898784 17907627 Lal11g1460 11 17898784 17907627 ECH
Lal11g1460 11 17898784 17907627 Lal1g1622 1 18638331 18648171 LSH