Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1455 ATGGCGAAAACGAGATCAGCAAAAAGAGATGTAGACTCATACACAATCAAAGGCACCAATTTGATCGTAAAAGTTGGAGATAGTGTGTTGATGCACCCTCCTGATACAAGCAAGCTACCGTATGTGGCACGTGTGGAGAAGATTGAAAATGACAACAGAAACAGTGTAAACGTGCGAATTCGCTGGTATTATAGGCCAGAAGATTCTATTGGTGGAAGAAGACAATTTCATGGAACAAATGAGCTTTTTTTGTCAGATCATTATGATGTTCAAAGTGCTCACACCATTGAAGGGAAGTGTGTTGTGCACCCCTTTGATGATTATATTAAGCTTGCGAAAGTAGGTTCGGAGGATTACTTTTGTAGGTTTGAGTACATGGCTGCTACTGGGACTTTCACTCCTGATAGTGTGGCTGTGTATTGCAAATGTGAAATGCCGTATAACCCAGATGCCTTCATGATGCAATGCGAGCGGTGCCAGGATTGGTACCATCTTGCTTGTATAGGCATGACTGCTGAAGAAGCAAATAAATTGGAGCACTATGTATGTTCTGAATGTTCATCTGATGATGATTTGAACAAATCCTTGCCTCCATCTTCTGTATCACCAACAATTCATGACAAGGAGAAACTCGATGCTAAAACATTACCTAGGGATGGAATAGCACCTGCCATTGAAGAGCCATGTGATAACCTACACGGAGATCAAGTTTCTAAGGCATTAGAATGTGTTACTCCTGGTATGGATCCTTTAAGTTTACCTGTGAACAATGTAGAGTCTGTGAATGTTGAAGGGGTCCAAGTAGATGCTGCTGGAGAAGAGGAAAAAACTGATAAAGAGAGAGTTGATGATGAGCATAAGAGTATTGAAGATCAAGGGCATGGTGAAGAACCTATTCTAGGGCATGGTGATGGCCAAGTACCAACCAATGATATCATAGAACTACAGAAGAATGATACAAAGATGACTAATCCTGAGTCGATGGAACGTAAGAGGAAACAGCCAATGGAAACTACAATGATGAACCATCATAATGCAGAAAACTTAGAAGAAATGGGTGGTCCTATAAAACAAGCACCAGCAGAGTTAGATGGTAGCACTCACACTACTGTGAATAATGTTGAAGCACAAGTGGATAGTGCTAAAAGGGTAATGGATGTGCTTAACAATATGGATGGCTTGGAAGCTGGTAGTTCTTTGTGGTGCAATGCTGTTTATTTGCTTGAGGATCCTGTGAAGAGGGTAATGTTCCTTCGAATGAAGCATGATGCTTCTAGGTTGGCTTGGATAAATTTTAGGTGTCAGAAGGACAAGTAA 1317 0.4108 MAKTRSAKRDVDSYTIKGTNLIVKVGDSVLMHPPDTSKLPYVARVEKIENDNRNSVNVRIRWYYRPEDSIGGRRQFHGTNELFLSDHYDVQSAHTIEGKCVVHPFDDYIKLAKVGSEDYFCRFEYMAATGTFTPDSVAVYCKCEMPYNPDAFMMQCERCQDWYHLACIGMTAEEANKLEHYVCSECSSDDDLNKSLPPSSVSPTIHDKEKLDAKTLPRDGIAPAIEEPCDNLHGDQVSKALECVTPGMDPLSLPVNNVESVNVEGVQVDAAGEEEKTDKERVDDEHKSIEDQGHGEEPILGHGDGQVPTNDIIELQKNDTKMTNPESMERKRKQPMETTMMNHHNAENLEEMGGPIKQAPAELDGSTHTTVNNVEAQVDSAKRVMDVLNNMDGLEAGSSLWCNAVYLLEDPVKRVMFLRMKHDASRLAWINFRCQKDK 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1455 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 198 IPR013083 -
Lal11g1455 438 Gene3D - 2 132 IPR043151 -
Lal11g1455 438 Coils Coil 371 391 - -
Lal11g1455 438 MobiDBLite consensus disorder prediction 269 307 - -
Lal11g1455 438 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Lal11g1455 438 SMART BAH_4 21 136 IPR001025 GO:0003682
Lal11g1455 438 PANTHER BNAC03G64850D PROTEIN 3 221 IPR045205 GO:0006325|GO:0035064
Lal11g1455 438 Pfam BAH domain 23 135 IPR001025 GO:0003682
Lal11g1455 438 SMART PHD_3 140 187 IPR001965 -
Lal11g1455 438 PANTHER OS08G0421900 PROTEIN 3 221 - -
Lal11g1455 438 SUPERFAMILY FYVE/PHD zinc finger 132 189 IPR011011 -
Lal11g1455 438 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Lal11g1455 438 MobiDBLite consensus disorder prediction 269 298 - -
Lal11g1455 438 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Lal11g1455 438 Pfam PHD-finger 140 188 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1455 Lal-Chr11 17867860 17870916 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1455 29 132 Core DNA Replication Machinery Family AT4G14700 25.641 5.57e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal11g1455 BAH 2.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1455 K25868 - lang:109333863 623.624