Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1443 ATGGCTCCGAGGGATATGACCGCCGTACTCTCCGTCGCCAACAACGCCGTCGCCGCCGCTAAAGAGATTAGGTATAGAGGCGTTAGGAAGCGTCCGTGGGGCCGTTATGCTGCTGAGATCCGGGATCCAGGGAAGAAAACACGTGTTTGGCTGGGAACATTTGATACACCCGAAGAGGCGGCGCGTGCTTATGACGCTGCAGCTCGCGAGTTCCGAGGCGCAAAAGCAAAGACAAATTTTCCAACCCCTTCAGAACTAATGAACATAAGCATTAACAACAACACGCGCAGCCCTAGCCAAAGCAGCACCATTGACTCTTCTTCTCCACCGCCGCCGTTGGCACTCGCCATCACTCCATTCTCCTCCTCTCCCGCCGATATATCCTACAAGGCGGCGCGTCCCGTGAGGTTCTTTGACGTGTTCGCTCAACATGTCAGCCGCCGTGAGATGTGCGGGTTCGATCACCCGGAGGCTGAGTTCCGCCGCGTGTCCACTGGCGTTCAGAGCGACTCTGATTCTTCCTCAGTCGTGGATTTTGAGCGTGTTCCTCGTAAAAAACTCTTAGATCTTGACCTTAACTTTCCTCCTCCGCCTGAGGTTGCATGA 606 0.5512 MAPRDMTAVLSVANNAVAAAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTPEEAARAYDAAAREFRGAKAKTNFPTPSELMNISINNNTRSPSQSSTIDSSSPPPPLALAITPFSSSPADISYKAARPVRFFDVFAQHVSRREMCGFDHPEAEFRRVSTGVQSDSDSSSVVDFERVPRKKLLDLDLNFPPPPEVA 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1443 201 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Lal11g1443 201 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Lal11g1443 201 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Lal11g1443 201 MobiDBLite consensus disorder prediction 82 109 - -
Lal11g1443 201 MobiDBLite consensus disorder prediction 82 111 - -
Lal11g1443 201 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 11 192 - -
Lal11g1443 201 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Lal11g1443 201 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Lal11g1443 201 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Lal11g1443 201 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Lal11g1443 201 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Lal11g1443 201 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 11 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1443 Lal-Chr11 17792456 17793061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1443 11 142 AP2-EREBP Transcription Factor Family AT3G15210 56.849 8.73e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal11g1443 AP2 6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1443 K09286 - gmx:100500601 202.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1443 11 17792456 17793061 Lal5g1719 5 19315325 19315897 ECH
Lal11g1443 11 17792456 17793061 Lal11g0203 11 1451601 1452254 ECH
Lal11g1443 11 17792456 17793061 Lal11g1443 11 17792456 17793061 ECH