Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1424 ATGACCAAAACGACATTACTCGACCAAGAAAACGACGATTTCTTCTACGAATCTCAAGACATTTTTGTTTCATCTTCTTGCTCCACTTCCAATTCCGATAACGAAGACGAAACCATTCATAATTACAATTATGCCCCTCTCACTCTCAACAATTACGACATTTGGATCTCTCAACCTTCTTCTATCTCCGAACGCCGTAACCGTCTCCTCCGCCACTTAGGCCTCGCCGGTGATACCTCTTTCTCTCGGGGAAAAACCGTTCACGGTGCCACCAATACCAACAATGCTGATATTTCAACATCAGTTTCATCCGATCAACTTACCCGCTCTCAGAAACCACCGCCGGAGGCAGAAGTCAGTTCTACCGTCGCCTCTTCCTCCGCTGCTGCCATGTTGCGATCGAAATCCGACAGCGCTGCGGATCGCGAGAATTGTAATGATAATAAGCCTTGTTTTTGTTCCTCCGGTTCGATTCATTCCGTAGATAACTGCGGTGGTAGTGGTTCACCGATTAAGCCTCCTTTGGGGAGGAATTGCAGGAAGGTGGATCAAATAGGAAGCGAATTGAGGTATTTGAGTTTGGATTGGAGCAATGGTTTAGAGAATGGGGATGTGGATGAGAATGAGAAGAGGGTGGAGGAGATAGAAGTGTGCACTATAAGAGATCTTGATAATGGGAAAGAGTTTGTGGTGAAGGAGTTGAGAGAAGATGGGACGTGGAACAAGGTTAAGGAGGTAGGGACAGGGAGACAGTTGACAATGGAGGAGTTTGAGATGACGGTTGGCCATTCGCCAATCGTTAAAGAATTGATGCGGCGCCAGAACGTGGAGGACGGTAAAGACGGTGGTTATAACAATAACAAGGACAATGTGAATTCAGTTACAAATGAAGGAGGAAGTGCTGGTGATTCTTTTAAATCGAAGAAGAAAGGGAGTTGGTTGAGGAGCCTAAGGAGCCTAAGGAGCATAAGGAGTGCCGCGAGCTCCATGAAGGGGCGTATTAGAGAGAGGATAAGCAGCGATGAGAGGGATACTTCGTCGGAGAAGGGTGGGAGGAGGTCGAGTTCTGCAACTGATGATAGCCAGGATGCTGCTTCGTTTCATGGATCGGAGAGAGTGAGGGTTAAGCAGTATGGGAAGTCGTGTAAAGATCTTACTGCAGTCTATAAGACGCAGGAGATTCAGGCTCATAATGGATCTATATGGAGTATTAAGTTTAGTTTGGATGGCAAGCATCTCGCAAGTGCGGGTGAGGATTGTGTGATTCATGTTTGGCAGGTTGTGGAATCTGAGAGGAAGGGGGAGTTGCTCACGGACAAACCCGAAGATGCGAATGTAAATATGTTGTTTGTTGTCAATGGCTCGCCTGATACAACAACCTTGTTGTCTCCTATGAAGGACAATAATCCTGAGAAAAAGAAAAAGGGAAGGTCATCCTTTAACAGAAAATCATTGAGCTTGGATCAATTAGTGGTGTCAGACACTGTTTTCGCTCTCACAGAAAAACCCATTTGCTCCTTTCAAGGCCATCTCGATGATGTGCTTGACCTCTCCTGGTCCAAATCTCAGCACTTGCTCTCATCTTCAATGGACAAAACAGTGCGGCTGTGGCATATGTCTAGCAAGTCTTGTTTGAAAATATTTTCACACAGTGACTATGGTGAGGTGGCTAAATTTATTAGTGAAAGCAGTTCTCTTCCCTCCAGTCCATATTCTTTGCTAATGATACCTCTCGCTACAATTTGTTTTCTATCTGGCACAGTTACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGACAAGTTGTTGATTGGATTGATCTGCATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGTCAGGGTGCACTAGTTGGTTCGTACAAGGGTAGCTGCCATTTATATAATGCATCTGAAAATAAGTTGCAACAGAAAAGTCAGATCAATCTGCAGAATAAGAAAAAGAAATCACATCAGAAGAAAATTACTGGTTTCCAGTTTGCACCGGGAAGTTCATCAGAAGTACTTATCACATCTGCTGATTCACGAATTCGGGTTGTTGATGGTGTTGATCTTGTTCACAAGTTTAAAGGATTTCGAAATGCAACTAGCCCAATTTCAGCATCCCTCACAGCAAATGGTAAATATATTGTATCAGCCAGTGAGGATTCCCATGTATACATCTGGAAAAACGAAGCAGATTGCCGACCTAACAGAAGCAAAGGTGTCATTGTCACGCATTCATATGAACACTTTCACTGTAAAGATGTGTCATTGGCCATTCCTTGGCCTGGTATGGGTGATGTATGGGACATGCATTCTACACCTCCTGGAGAACAAACTGAGCTCGATCACAATGATGATGAGGCCTCGTCAGAAAATCATCCTCCTTCCCCTGTAGTGGAAAACTTTGATACCGAGGGTTCACGATCTGCATCAGGTTACAACAGTCCGCGCCATGGAACCATTGCAAGTGCGACAAACAGTTACTTTTTTGATAGAATTTCCGCAACATGGCCAGAAGAAAAACTTCTTGCTCCAAGGAATCGAAGCAGCCCTCGTGTGAGTGTGGAATTCTCAAACGGTGTAAGTCAAAACATGTCAGCCTTGGGTATGGTGATTGTAACTGCTGGCCTTCGAGGTGAAATTAGAACATTCCAAAATTTTGGATTGCCACTTCGAATATAA 2745 0.4434 MTKTTLLDQENDDFFYESQDIFVSSSCSTSNSDNEDETIHNYNYAPLTLNNYDIWISQPSSISERRNRLLRHLGLAGDTSFSRGKTVHGATNTNNADISTSVSSDQLTRSQKPPPEAEVSSTVASSSAAAMLRSKSDSAADRENCNDNKPCFCSSGSIHSVDNCGGSGSPIKPPLGRNCRKVDQIGSELRYLSLDWSNGLENGDVDENEKRVEEIEVCTIRDLDNGKEFVVKELREDGTWNKVKEVGTGRQLTMEEFEMTVGHSPIVKELMRRQNVEDGKDGGYNNNKDNVNSVTNEGGSAGDSFKSKKKGSWLRSLRSLRSIRSAASSMKGRIRERISSDERDTSSEKGGRRSSSATDDSQDAASFHGSERVRVKQYGKSCKDLTAVYKTQEIQAHNGSIWSIKFSLDGKHLASAGEDCVIHVWQVVESERKGELLTDKPEDANVNMLFVVNGSPDTTTLLSPMKDNNPEKKKKGRSSFNRKSLSLDQLVVSDTVFALTEKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHMSSKSCLKIFSHSDYGEVAKFISESSSLPSSPYSLLMIPLATICFLSGTVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWIDLHEMVTAACYTPDGQGALVGSYKGSCHLYNASENKLQQKSQINLQNKKKKSHQKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNATSPISASLTANGKYIVSASEDSHVYIWKNEADCRPNRSKGVIVTHSYEHFHCKDVSLAIPWPGMGDVWDMHSTPPGEQTELDHNDDEASSENHPPSPVVENFDTEGSRSASGYNSPRHGTIASATNSYFFDRISATWPEEKLLAPRNRSSPRVSVEFSNGVSQNMSALGMVIVTAGLRGEIRTFQNFGLPLRI 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1424 914 SMART WD40_4 617 655 IPR001680 GO:0005515
Lal11g1424 914 SMART WD40_4 500 538 IPR001680 GO:0005515
Lal11g1424 914 SMART WD40_4 662 707 IPR001680 GO:0005515
Lal11g1424 914 SMART WD40_4 708 749 IPR001680 GO:0005515
Lal11g1424 914 SMART WD40_4 574 614 IPR001680 GO:0005515
Lal11g1424 914 SMART WD40_4 387 426 IPR001680 GO:0005515
Lal11g1424 914 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 507 541 - -
Lal11g1424 914 ProSiteProfiles Trp-Asp (WD) repeats profile. 588 615 IPR001680 GO:0005515
Lal11g1424 914 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 17 559 - -
Lal11g1424 914 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 585 914 - -
Lal11g1424 914 MobiDBLite consensus disorder prediction 815 838 - -
Lal11g1424 914 Gene3D - 324 471 IPR015943 GO:0005515
Lal11g1424 914 ProSiteProfiles Trp-Asp (WD) repeats profile. 394 435 IPR001680 GO:0005515
Lal11g1424 914 MobiDBLite consensus disorder prediction 277 308 - -
Lal11g1424 914 Gene3D - 492 569 IPR015943 GO:0005515
Lal11g1424 914 Pfam WD domain, G-beta repeat 584 614 IPR001680 GO:0005515
Lal11g1424 914 Pfam WD domain, G-beta repeat 712 749 IPR001680 GO:0005515
Lal11g1424 914 Pfam WD domain, G-beta repeat 392 425 IPR001680 GO:0005515
Lal11g1424 914 Pfam WD domain, G-beta repeat 502 537 IPR001680 GO:0005515
Lal11g1424 914 MobiDBLite consensus disorder prediction 797 811 - -
Lal11g1424 914 Gene3D - 578 771 IPR015943 GO:0005515
Lal11g1424 914 MobiDBLite consensus disorder prediction 325 370 - -
Lal11g1424 914 MobiDBLite consensus disorder prediction 330 356 - -
Lal11g1424 914 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 394 427 - -
Lal11g1424 914 MobiDBLite consensus disorder prediction 285 302 - -
Lal11g1424 914 SUPERFAMILY WD40 repeat-like 389 750 IPR036322 GO:0005515
Lal11g1424 914 MobiDBLite consensus disorder prediction 84 133 - -
Lal11g1424 914 MobiDBLite consensus disorder prediction 81 143 - -
Lal11g1424 914 ProSiteProfiles Trp-Asp (WD) repeats profile. 507 547 IPR001680 GO:0005515
Lal11g1424 914 MobiDBLite consensus disorder prediction 791 838 - -
Lal11g1424 914 MobiDBLite consensus disorder prediction 459 480 - -
Lal11g1424 914 PRINTS G protein beta WD-40 repeat signature 413 427 IPR020472 -
Lal11g1424 914 PRINTS G protein beta WD-40 repeat signature 525 539 IPR020472 -
Lal11g1424 914 PRINTS G protein beta WD-40 repeat signature 601 615 IPR020472 -
Lal11g1424 914 PANTHER WD REPEAT DOMAIN 44 585 914 IPR040324 -
Lal11g1424 914 PANTHER WD REPEAT DOMAIN 44 17 559 IPR040324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1424 Lal-Chr11 17629081 17634364 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1424 394 617 U-box Gene Family AT1G04510 22.353 3.37e-06 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0316 20 2515657 2521558 Lal11g1424 11 17629081 17634364 LSH