Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1396 ATGAACCAGAAGGCCAATGTTTCAAAAGAGCTAAACGCTAAACACAAAAAGATACTGGAAGGGCTTCTTAAATTACCAGATAATAGGGAATGTGCTGATTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTAAATCTTGGCATCTTTATATGCATGCAGTGCTCAGGAATTCATCGAAGTTTGGGGGTACATATTTCAAAGGTTCGTTCTGCAACTCTGGACACTTGGCTTCCAGAGCAAGTTGCATTCATTCAATCAATGGGCAATGAGAAAGCAAATAGTTATTGGGAAGCAGAATTACCTCCACATTATGATAGAGTTGGAATTGAGAATTTCATTCGTGCAAAGTATGAAGAGAAGAGATGGGTTTCACGGGATGGAAAGCCAAAATCCCCATCTAGACTGCAGGGAGAGAAAACTCAGTCACATTGGCAGAGGCCTGTGGAAAGAAGTGGTCAAGGTTATGCAGCTAGTTCTGAGATTTCTTTTCAGGAAAGGAAGAAAATCCAACCATCAAATGCAATTCCTGTCACAAGAGTTAGTGTTCCTTCTCCTCCCAAAGGACCTGATCAGGTAACCCCTATTACCAAACCTCAGCATGTTCAGAAAGTGGAACCAGTATCACCAAAACCACCAGCTGAAACTTCAAATCAGGCTACAGATACTGCTCAAAATACTCCTCCAAAAGTTGACTATGCTACGGACCTTTTCAACATGTTGTCTATGGATGGCCCAAGTGAAAATGGCTCAGAGGCAGCTACTGCTACTGCTGATGATAATAATTGGGCAGCTTCTGCAGAGGCGTCAACAGCCGAGAAGACTAGTCCGTTGAAAGCATTTGAGAGTACTCCCCAATCCGTATCTGGAATTGAGGATCTATTTAAAGATTCACCTTCACTGACACCAAGCTTAGCTCCTGGAAAACCAGAGAAAGATGTTAAAAATGATATCATGAGCCTCTTTGAGAAGAGCAATATGGTTTCTCCATTTTCGATGCATCAACAGCAGCTGGCCATGCTAGCACAGCAACAGTCTCTTCTAATGGCTGCTACAACTAATTCTACTGCGGGGAATCCCACATATACTGCTAGTACACAACATCCTAGCTCTAATATTCCTGGCCAGAATTGGCCAGCTGCGGGATACCCAATTTATGGAGTAACGCCCATGGTTGGTCAGGGAGAGCTGCAGAAACTTATGCAGACTAGGAACATGACCCCAGCACATTCACCAGTGAGCTCTGTCCCATATCCTTCATCCGGTTTTTATTCTTTGGGGCAAGTTGCTCCGGTTAATGGAACGATGACAGCCGGAGCGAATAAACCTCAGTCAGCAGCACCACCAGTGTCATCAACTACTTCACAGTCTGCAAAGGATTATGATTTTTCCTCCTTAACACAAGGGATGTTTGCGAAACAATGA 1422 0.4381 MNQKANVSKELNAKHKKILEGLLKLPDNRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPHYDRVGIENFIRAKYEEKRWVSRDGKPKSPSRLQGEKTQSHWQRPVERSGQGYAASSEISFQERKKIQPSNAIPVTRVSVPSPPKGPDQVTPITKPQHVQKVEPVSPKPPAETSNQATDTAQNTPPKVDYATDLFNMLSMDGPSENGSEAATATADDNNWAASAEASTAEKTSPLKAFESTPQSVSGIEDLFKDSPSLTPSLAPGKPEKDVKNDIMSLFEKSNMVSPFSMHQQQLAMLAQQQSLLMAATTNSTAGNPTYTASTQHPSSNIPGQNWPAAGYPIYGVTPMVGQGELQKLMQTRNMTPAHSPVSSVPYPSSGFYSLGQVAPVNGTMTAGANKPQSAAPPVSSTTSQSAKDYDFSSLTQGMFAKQ 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1396 473 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Lal11g1396 473 CDD ArfGap 19 117 - -
Lal11g1396 473 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Lal11g1396 473 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Lal11g1396 473 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Lal11g1396 473 MobiDBLite consensus disorder prediction 123 230 - -
Lal11g1396 473 MobiDBLite consensus disorder prediction 434 473 - -
Lal11g1396 473 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Lal11g1396 473 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Lal11g1396 473 MobiDBLite consensus disorder prediction 211 230 - -
Lal11g1396 473 PANTHER ARF GTPASE ACTIVATOR 1 473 - -
Lal11g1396 473 MobiDBLite consensus disorder prediction 155 179 - -
Lal11g1396 473 MobiDBLite consensus disorder prediction 262 292 - -
Lal11g1396 473 MobiDBLite consensus disorder prediction 134 148 - -
Lal11g1396 473 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 473 IPR044520 GO:0005096
Lal11g1396 473 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Lal11g1396 473 MobiDBLite consensus disorder prediction 262 311 - -
Lal11g1396 473 SMART arf_gap_3 16 130 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1396 Lal-Chr11 17419132 17425162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1396 16 123 C2H2 Transcription Factor Family AT4G05330 50.000 1.66e-30 119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1396 11 17419132 17425162 Lal11g1396 11 17419132 17425162 ECH