Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1393 ATGACCAAGTCTAATTCGACTTGTGAAAATAATAATAATGGATTGAAGAAAGGTCCTTGGACTCCAGAGGAAGATCACAAACTCACACATTACATTCAGAAACATGGACATGGGAAATGGCGTATCCTTCCAAAGAATGCAGGACTAAAAAGATGTGGAAAAAGTTGCCGGCTTCGTTGGACAAATTATTTGAGGCCTGATATAAAGAGGGGGAAATTCTCATTGGAAGAAGAAGAAACCATCATCCATTTACATAGTGTGATGGGAAACAAGTGGTCTACAATTGCTACAAACTTACCTAGAAGAACTGATAATGAGATCAAGAATTATTGGAATACCCACATCAAAAAGAAGCTATTGAAGATAGGAATAGATCCGACGACTCACACACTAAGCCTTGAGGTTCTTCAACTCTCCTCCATTCTCAACTCTTTATACACTTCACCCCAATTCAACTATCCTAGTCATTTTGGGATGAGTGATAGTGTGGTAAATAACCAAAGCCAAATCCTAAATTTACTCACAACTTTTATAACATGTCAAAGTAGAAATCAAGATGTTATGAATAATAATATTTTGCATCAAAACCAAATTGGTATAAGTACTAGTAGCCCTCTATTGCAAAACCAACCATGTTCCCAATCAATGCAACTTAACCCTATTCAACCCTTCCAATCAAACCAACCTCAAGTCCAAGTTCAAGAAAATCACCAACCTTGTGATACATCTAATAATCCATTTCATATAGAGTCTCAACTCATGAAAACAAAATTAGAGAATCAAATTTCTCCAAATTTGTGGCAATATTATGGAGGTCATCACAAACAAGAGACACAATCATCATTAGCTATGCAAAGAGTCAACAACTTATTGGAAAATCAGATTTTAACATGCAACAATGAGGGAATGCTAAATTTCAACTTAAACTCAGTGCTATCTTCCACACTTTCTTATTCTTCCCATGGTACTTTGAATTCATCATCTTCCATTGAAGATGAAAGGGATACCTACAATAGCAAATGTTATTTCTTATATTAA 1038 0.3526 MTKSNSTCENNNNGLKKGPWTPEEDHKLTHYIQKHGHGKWRILPKNAGLKRCGKSCRLRWTNYLRPDIKRGKFSLEEEETIIHLHSVMGNKWSTIATNLPRRTDNEIKNYWNTHIKKKLLKIGIDPTTHTLSLEVLQLSSILNSLYTSPQFNYPSHFGMSDSVVNNQSQILNLLTTFITCQSRNQDVMNNNILHQNQIGISTSSPLLQNQPCSQSMQLNPIQPFQSNQPQVQVQENHQPCDTSNNPFHIESQLMKTKLENQISPNLWQYYGGHHKQETQSSLAMQRVNNLLENQILTCNNEGMLNFNLNSVLSSTLSYSSHGTLNSSSSIEDERDTYNSKCYFLY 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1393 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Lal11g1393 345 PANTHER TRANSCRIPTION FACTOR MYB30-LIKE 5 333 - -
Lal11g1393 345 SMART sant 69 117 IPR001005 -
Lal11g1393 345 SMART sant 16 66 IPR001005 -
Lal11g1393 345 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Lal11g1393 345 CDD SANT 72 115 IPR001005 -
Lal11g1393 345 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Lal11g1393 345 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Lal11g1393 345 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Lal11g1393 345 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Lal11g1393 345 MobiDBLite consensus disorder prediction 1 23 - -
Lal11g1393 345 CDD SANT 19 64 IPR001005 -
Lal11g1393 345 Gene3D - 72 119 - -
Lal11g1393 345 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 5 333 - -
Lal11g1393 345 MobiDBLite consensus disorder prediction 1 17 - -
Lal11g1393 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Lal11g1393 345 Gene3D - 16 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1393 Lal-Chr11 17381147 17382792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1393 8 148 MYB Transcription Factor Family AT4G21440 75.352 4.34e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal11g1393 Myb_DNA-binding 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1393 K09422 - gmx:547460 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1393 11 17381147 17382792 Lal11g1393 11 17381147 17382792 ECH
Lal11g1393 11 17381147 17382792 Lal1g1660 1 19008975 19011620 LSH