Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1376 ATGCTAGCAGTATCCCCTCCTGTGTTCTCAACTATGGGAATATGGCCCTTAGAATTTGAGACAATAAGTCATAATGATAACTACAACTACTTCATCACCTCGGAATACTACTCATTTCCTCATCAATTTTCTTCACTTCACTCGCAGGTTGAGGTTCAAACGTCTACACCATCCTCGAACCCTACCATGGTCAAGAAACTCAACCACAATGCTAGTGAACGTGATCGCCGCAAGAGAATCAATATCTTGTATTCCTCACTTCGTTCAGTTCTTCCTATGGCAGATCAAATGAAGAATATGAGCATTCCTGGAACAATTTCACAAGTCCTCAAATACATACCTATATTACAAAAGCAAGTGGAAGGACTAACTAAGAAGAAGGAGGAACTTTTATTGAGAATTTCACGGCAAGAAGATGCACTAATGAACAAAGAATCTCAAAGGAAGATTGCCCCTCATAGTTATGCTTTTGCAGTTTCAACAAGTAGGTTCAATGATAATGAGGCTTCTATTCAGATTTCCACTTGTGAGGAATCCCACAAGAGTTCATTCTCTGAGATCTTGTTATGTTTAGAAAATATTGGGCTTGTCCTTCTAAATGCTTCTTCATCTGATACTTTTGGAGAGAGAATCTTCTATAACTTGCATCTCCAAGTGGAGAAAACTTACAGATTAGAGTCTCAGATTCTAAGTGAAATGCTTTTGTCAATGTTAGAGAAGAAGGAAGGGGTTTTCTAA 738 0.3835 MLAVSPPVFSTMGIWPLEFETISHNDNYNYFITSEYYSFPHQFSSLHSQVEVQTSTPSSNPTMVKKLNHNASERDRRKRINILYSSLRSVLPMADQMKNMSIPGTISQVLKYIPILQKQVEGLTKKKEELLLRISRQEDALMNKESQRKIAPHSYAFAVSTSRFNDNEASIQISTCEESHKSSFSEILLCLENIGLVLLNASSSDTFGERIFYNLHLQVEKTYRLESQILSEMLLSMLEKKEGVF 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1376 245 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 239 IPR015660 GO:0003700|GO:0006357
Lal11g1376 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 134 IPR036638 GO:0046983
Lal11g1376 245 CDD bHLH_AtORG2_like 65 137 - -
Lal11g1376 245 Coils Coil 120 147 - -
Lal11g1376 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 116 IPR011598 GO:0046983
Lal11g1376 245 Gene3D - 57 149 IPR036638 GO:0046983
Lal11g1376 245 Pfam Helix-loop-helix DNA-binding domain 65 117 IPR011598 GO:0046983
Lal11g1376 245 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 239 - -
Lal11g1376 245 SMART finulus 70 122 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1376 Lal-Chr11 17286965 17288696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1376 1 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 44.531 1.98e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal11g1376 HLH 4.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1376 - - vra:106752555 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1376 11 17286965 17288696 Lal20g0287 20 2145719 2147525 LSH