Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1350 ATGGCTTCTTCTTCTTCTGATCCCGGTAAGTCTGAAATTGGTGGCGGTGCGGTGGAGACTTCGGAAGCAGCGGTGGTGGCGGTGGCGAACGATCAATCGTTACTGTACAGGGGATTGAAGAAAGCGAAGAAAGAGAGAGGTTGTACTGCGAAAGAACGCATCAGCAAAATGCCTCCTTGTGCCGCTGGAAAACGCAGCTCTATATACCGCGGCGTTACCAGGCATAGATGGACTGGTCGCTATGAGGCACATCTTTGGGATAAAAGTACATGGAACCAAAATCAGAATAAGAAAGGGAAGCAAGGGGCATATGATGATGAGGAAGCAGCAGCTAGGGCATATGACCTTGCTGCTCTGAAGTATTGGGGTCCAGGGACTCTCATTAATTTCCCAGTGACTGATTATACAAGAGATCTTGAAGAAATGCAGAATGTTTCGAGAGAGGAATACCTTGCATCTTTACGGCGGAAGAGCAGTGGTTTTTCAAGAGGAATGTCAAAATTTCGTGCACTCTCCAGTCGATGGGAGCCATCATATAGTCGTATTGCTGGATCTGACTCCTTCAATAGTTTGCATTATGGCACAGGTGATGATTCAGCTGCAGAAACTGATTATGCAAGTGGTTTCTGTATAGAAAGAAGGATTGATTTAACTGGTCACATTAAGTGGTGGGGGTCTAATAAAAGTCGACAGCCTGATGCTGGAATGAGATTATCAGAAGAAAAGAAACATGGTTTTGCTGGAGATATTTGCAGCGAACTTAAAACGCTGGAACAGAAAGTCCAACCGACTGCACCATACCAGATGCCAGAGTTAGGCAGGTCCCACAATGAGAAAAAACATGGAAGTTCTTCGGTCTCCGCCTTAAGTATCTTGTCGCAATCTGCTGCTTATAAGAGCTTGCAAGAGAAATCATCAAAGAAACAGGAAAATAGCACTGATAATGATGAGAATGAAAACAAGAATACAATCAATAAGTTGGATCATGGCAAAGCAGTTGATAAATCATCAAATTATGACGGTGATGCAATGGGAACAAGCGGGGCATTGTGTCTTCAAAGAAATGTTTATCCATCAACTCCATTCTTGTCTGCACCACTTTTGACAGCATACAATACTGTTGATCCATCATTGGTAGATCCTGTTTTGTGGACATCTTTTGTGCCTATGCTTTCTGGTAGCCTTTCTCGTCCCACCGAGGTTACAAAGACTGAAACCAGTTCATCATACACTATCTTTCAGCCAGAGGAGTAA 1254 0.4378 MASSSSDPGKSEIGGGAVETSEAAVVAVANDQSLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGMSKFRALSSRWEPSYSRIAGSDSFNSLHYGTGDDSAAETDYASGFCIERRIDLTGHIKWWGSNKSRQPDAGMRLSEEKKHGFAGDICSELKTLEQKVQPTAPYQMPELGRSHNEKKHGSSSVSALSILSQSAAYKSLQEKSSKKQENSTDNDENENKNTINKLDHGKAVDKSSNYDGDAMGTSGALCLQRNVYPSTPFLSAPLLTAYNTVDPSLVDPVLWTSFVPMLSGSLSRPTEVTKTETSSSYTIFQPEE 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1350 417 Gene3D AP2/ERF domain 68 133 IPR036955 GO:0003700|GO:0006355
Lal11g1350 417 ProSiteProfiles AP2/ERF domain profile. 68 131 IPR001471 GO:0003700|GO:0006355
Lal11g1350 417 SUPERFAMILY DNA-binding domain 67 132 IPR016177 GO:0003677
Lal11g1350 417 MobiDBLite consensus disorder prediction 303 336 - -
Lal11g1350 417 SMART rav1_2 68 137 IPR001471 GO:0003700|GO:0006355
Lal11g1350 417 PANTHER BNAA03G19580D PROTEIN 2 411 - -
Lal11g1350 417 MobiDBLite consensus disorder prediction 300 339 - -
Lal11g1350 417 Pfam AP2 domain 68 123 IPR001471 GO:0003700|GO:0006355
Lal11g1350 417 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Lal11g1350 417 PRINTS Ethylene responsive element binding protein signature 113 133 IPR001471 GO:0003700|GO:0006355
Lal11g1350 417 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1350 Lal-Chr11 17056211 17062219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1350 1 389 AP2-EREBP Transcription Factor Family AT2G41710 64.339 6.12e-158 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal11g1350 AP2 2.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1350 K09285 - gmx:100786651 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1350 11 17056211 17062219 Lal11g1350 11 17056211 17062219 ECH