Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1349 ATGGATGGAGTTAGTGATAAAGGGTTGTTGGAATATGCAAGGAAGTGTACTCCACCACCCTTCTTGTTGAAGACCTACATGTTGGTGGAGGATCCGGCTACCGACGATGTCGTATCGTGGAATGCCGAAGGCACCGCCTTTGTGGTGTGGCAACCGGCGGAGTTTGCCCGTGATCTCCTCCCAACACTCTTCAAGCATAGCAACTTCTCTAGCTTTGTCCGGCAGCTCAATACCTATGGTTTTCGTAAAGTTACAACAAGCAGATGGGAATTTTGCAATGAAAAGTTTAAGAAAGGTGAAAGGGACCTTCTATGCGAGATTCGAAGAAGAAAATCATGGAGAATCAAACAACAACAATCTACTACACCAAACCAAGTTGCAACACCACCCCAAGATTCTGATGAAGATCAAAGATCTGCATCAACTTCATCATCTTCAGGATACACTACTCTTATTGATGAAAACAAGAGACTGAAAAAAGAGAATGGGGTGTTAAGTTCTGAACTCAAAAGCATGAGAAACAAGTGTATGGAACTTCTTGATTTAGTGGCTAAATATAGTAATAATAATAATAATTCACATTATGCAACAAAGAAGGAAGAGAAGAATAAGAAAGAAGATGAAAAGACAATGCTGTTTGGAGTGAGATTAGATGTTGTTCAAGGAGAGAAGAGGAAAAGATCATCTGAGATTAGTGAAAAAAGTGGAAGCATTTTGCTGTCTCAGTCATGA 732 0.403 MDGVSDKGLLEYARKCTPPPFLLKTYMLVEDPATDDVVSWNAEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVTTSRWEFCNEKFKKGERDLLCEIRRRKSWRIKQQQSTTPNQVATPPQDSDEDQRSASTSSSSGYTTLIDENKRLKKENGVLSSELKSMRNKCMELLDLVAKYSNNNNNSHYATKKEEKNKKEDEKTMLFGVRLDVVQGEKRKRSSEISEKSGSILLSQS 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1349 243 MobiDBLite consensus disorder prediction 115 153 - -
Lal11g1349 243 SUPERFAMILY "Winged helix" DNA-binding domain 17 110 IPR036390 -
Lal11g1349 243 MobiDBLite consensus disorder prediction 116 152 - -
Lal11g1349 243 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal11g1349 243 MobiDBLite consensus disorder prediction 195 209 - -
Lal11g1349 243 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal11g1349 243 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 243 IPR027725 -
Lal11g1349 243 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-3 5 243 - -
Lal11g1349 243 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal11g1349 243 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal11g1349 243 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal11g1349 243 Gene3D - 13 111 IPR036388 -
Lal11g1349 243 MobiDBLite consensus disorder prediction 221 243 - -
Lal11g1349 243 Coils Coil 155 189 - -
Lal11g1349 243 MobiDBLite consensus disorder prediction 188 209 - -
Lal11g1349 243 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1349 Lal-Chr11 17053755 17057096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1349 18 186 HSF AT2G41690 61.111 7.35e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lal11g1349 HSF_DNA-bind 5.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1349 K09419 - gmx:100802739 314.694