Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1332 ATGGGTAATTGTTGTGTGACACCACGAGTTGGACCAGGAGAAAGGAACAATAAGAAGAAGAAGAAAGTGAAGGAAAACCCTTTCACTGTTGATTACATAAACAACACCGTTTCAGAAGGAACAAAACTCACCGTTTTGAGTAACCCAACGGGTAAAGAGATAGAGCTTCGATACGAGTTGGGTCAAGAACTGGGTCGTGGCGAGTTTGGTGTAACATATCTATGTACAGATAAAGAAACAGGTGAAGAGTTAGCGTGTAAATCAATTTCTAAGAAGAAGCTTAAAACTGCTATTGATATTGATGATGTGAGAAGAGAGGTTGAGATAATGAGGCATTTACCTAAACATCCTAACATTGTGACTTTGAAAGATACTTATGAGGATGATAATGCTGTTCATCTTGTTATGGAGCTTTGTGCGGGTGGTGAACTTTTTGATAGGATTGTGGCGCGTGGCCACTATACTGAACGTTCTGCTGCTGTTATCATTAAGACCATTGTTGAAGTTGTGCAGATGTGCCACAAACATGGTGTGATGCATCGGGATCTCAAACCTGAGAATTTTCTGTTTGCAAATAAGAAGGAAACGGCAGCTTTGAAGGCTATTGATTTTGGATTGTCAGTGTTCTTTAAATCAGGTGAAAGATTTAATGAGATTGTTGGAAGTCCATATTACATGGCTCCAGAGATATTAAAGCGAAACTATGGCCCGGAAGTAGATATCTGGAGTGCTGGTGTAATTCTGTACATCTTACTCTGTGGTGTCCCACCATTTTGGGCAGAAACTGAACAAGGAGTTGCACAAGCAATAATACAATCCGTTGTTGATTTTAAAAGAGACCCTTGGCCAAAAGTTTCTGATAATGCAAAAGACCTTGTGAAGAAGATGCTTGATCCTGTCCCAGGACGGAGGCTTACTGCACAGGCTGTTTTAGATCATCCATGGATACACAATGCGTACAAAGTTCCTAATGTCTCATTAGGAGAATCTGTTAAAGCAAGGCTCCATCAATTTTCTGTAATGAACAAGCTTAAGAAAGTGGCTTTGAGGGTGATTGCCGAGCATTTGTCAGCTGAAGAAGCTGCTGGACTAAAAGAAAGGTTCCAGACTATGGATGCAGACAACAGAGGCAAGATTAATATGGATGAACTACGAATAGGGTTGTATAAACTAGGCCATCAAGTTCATGATGAAGATATCAATAATATTATGGAAGCTGGTGATGTAGATAATGATGGGTACCTAGGTTACGGAGAGTTTGTAGCCATTTCTGTTCATCTGAGAAAGATGGGAAATGAAGAGCACCTTCACAAAGCTTTCCAATATTTTGATGAGAATCAAAATGGTTATATTGAAATCGAGGAGTTGCGTAAAGCCCTATCTAATGAGGTTGGGGTGAACGATGAAGAAGTCATTAATGCAATTATGCATGATGTGGACACAGACAAGGATGGAAAAATAAGCGGTGAGGAATTTGCTGCAATGATGAAGGCTGGCACAGATTGGAGAAAAGTATCAAGGCAGTATTCGCGAGAAAGGTTCAAGAATCTCAGCCAAAAATTGTTCAAGGACGGTTCATTGCAATTGAACAATGAAAAACCAGTTTTACATGTGGAAAAGAGTATATGA 1629 0.399 MGNCCVTPRVGPGERNNKKKKKVKENPFTVDYINNTVSEGTKLTVLSNPTGKEIELRYELGQELGRGEFGVTYLCTDKETGEELACKSISKKKLKTAIDIDDVRREVEIMRHLPKHPNIVTLKDTYEDDNAVHLVMELCAGGELFDRIVARGHYTERSAAVIIKTIVEVVQMCHKHGVMHRDLKPENFLFANKKETAALKAIDFGLSVFFKSGERFNEIVGSPYYMAPEILKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIQSVVDFKRDPWPKVSDNAKDLVKKMLDPVPGRRLTAQAVLDHPWIHNAYKVPNVSLGESVKARLHQFSVMNKLKKVALRVIAEHLSAEEAAGLKERFQTMDADNRGKINMDELRIGLYKLGHQVHDEDINNIMEAGDVDNDGYLGYGEFVAISVHLRKMGNEEHLHKAFQYFDENQNGYIEIEELRKALSNEVGVNDEEVINAIMHDVDTDKDGKISGEEFAAMMKAGTDWRKVSRQYSRERFKNLSQKLFKDGSLQLNNEKPVLHVEKSI 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1332 542 ProSiteProfiles Protein kinase domain profile. 58 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal11g1332 542 SUPERFAMILY Protein kinase-like (PK-like) 57 325 IPR011009 -
Lal11g1332 542 Gene3D - 325 499 - -
Lal11g1332 542 Gene3D Transferase(Phosphotransferase) domain 1 144 324 - -
Lal11g1332 542 ProSitePatterns EF-hand calcium-binding domain. 444 456 IPR018247 -
Lal11g1332 542 CDD STKc_CAMK 57 315 - -
Lal11g1332 542 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 14 513 - -
Lal11g1332 542 ProSiteProfiles EF-hand calcium-binding domain profile. 395 430 IPR002048 GO:0005509
Lal11g1332 542 ProSitePatterns EF-hand calcium-binding domain. 480 492 IPR018247 -
Lal11g1332 542 ProSiteProfiles EF-hand calcium-binding domain profile. 359 394 IPR002048 GO:0005509
Lal11g1332 542 SUPERFAMILY EF-hand 340 508 IPR011992 -
Lal11g1332 542 PANTHER SERINE/THREONINE-PROTEIN KINASE 14 513 - -
Lal11g1332 542 Pfam EF-hand domain pair 364 423 IPR002048 GO:0005509
Lal11g1332 542 Pfam EF-hand domain pair 433 497 IPR002048 GO:0005509
Lal11g1332 542 Gene3D Phosphorylase Kinase; domain 1 60 143 - -
Lal11g1332 542 ProSiteProfiles EF-hand calcium-binding domain profile. 431 466 IPR002048 GO:0005509
Lal11g1332 542 ProSiteProfiles EF-hand calcium-binding domain profile. 467 502 IPR002048 GO:0005509
Lal11g1332 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Lal11g1332 542 SMART serkin_6 58 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal11g1332 542 SMART efh_1 471 499 IPR002048 GO:0005509
Lal11g1332 542 SMART efh_1 399 427 IPR002048 GO:0005509
Lal11g1332 542 SMART efh_1 363 391 IPR002048 GO:0005509
Lal11g1332 542 SMART efh_1 435 463 IPR002048 GO:0005509
Lal11g1332 542 ProSitePatterns Protein kinases ATP-binding region signature. 64 87 IPR017441 GO:0005524
Lal11g1332 542 ProSitePatterns EF-hand calcium-binding domain. 408 420 IPR018247 -
Lal11g1332 542 CDD EFh 435 497 IPR002048 GO:0005509
Lal11g1332 542 Pfam Protein kinase domain 58 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1332 Lal-Chr11 16926597 16930720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1332 1 532 EF-hand Containing Proteins AT5G19450 73.596 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal11g1332 Pkinase 1.3e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1332 K13412 - gmx:100790745 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1332 11 16926597 16930720 Lal11g1332 11 16926597 16930720 ECH
Lal11g1332 11 16926597 16930720 Lal1g1695 1 19383361 19388620 LSH
Lal11g1332 11 16926597 16930720 Lal20g0254 20 1824480 1828761 LSH
Lal11g1332 11 16926597 16930720 Lal13g1519 13 14917876 14924831 PCT
Lal13g1519 13 14917876 14924831 Lal11g1332 11 16926597 16930720 PCT