Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1326 ATGGATACATGCAGAAAATCCCCTTTCAAGCCATGGAAGAAAGGGCCGACCCGGGGTAAAGGTGGCCCTCAGAATGCTTCGTGTAAGTATCGAGGCGTTCGACAGAGAACGTGGGGAAAATGGGTAGCTGAGATAAGAGAGCCAAAGAAGAGAACCAGGCTATGGCTTGGTTCTTTTGCTACAGCTGAAGAAGCTGCTATGGCTTATGATGAGGCTGCAAGGAAACTCTATGGACCAGATGCATACCTTAACCTTCCTCACTTGCAACCGAGTTCCACTGTTTCTCCTACGAAATCTGGGAAGTTCAAATGGCTGCCTTCGAAGAATTTCATGTCAATGTTTCCTTCTTGTGGATTACTCAATGTGAATGCTCAACCTAGTGTTCATTTAATCCACCAAAGGCTACAACAGCTTAAGCAAAAAGGGGTTGTAAGTCAATCATCATTCCCATCTAGTTCATCAACCAATGGTCCAAAGACAGAAACTCTGAAAAGCCATGCAGAAAATCGCCTGGAGGAAAAAAATGCACAAACATCGTCGGAAGAGATGCTTAGAGATTTTCAGGAGAAACCGCAGATAGACCTCCATGAGTTTCTTCAACAGATGGGCATAGTGAGAGAAGAAAGGCAGACAGAAAGAACTGATAGCTCGGGTAGTTCAACAATGGTACCTGAAGCTGTATCGAGAGATGGGAATGATCAACTAGGCGTGTTTTCTGACAAGAGTGTTAACTGGGAAGCATTGATTGAGATGCATGGAATTGCAGGTATTCAGGAATCAGAAGGAACACAGTTTGAAGCATATGACACAAATGATGACCTCTCTTTCTCCACTTCCATTTGGAATTTCTAA 852 0.439 MDTCRKSPFKPWKKGPTRGKGGPQNASCKYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARKLYGPDAYLNLPHLQPSSTVSPTKSGKFKWLPSKNFMSMFPSCGLLNVNAQPSVHLIHQRLQQLKQKGVVSQSSFPSSSSTNGPKTETLKSHAENRLEEKNAQTSSEEMLRDFQEKPQIDLHEFLQQMGIVREERQTERTDSSGSSTMVPEAVSRDGNDQLGVFSDKSVNWEALIEMHGIAGIQESEGTQFEAYDTNDDLSFSTSIWNF 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1326 283 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Lal11g1326 283 MobiDBLite consensus disorder prediction 163 181 - -
Lal11g1326 283 MobiDBLite consensus disorder prediction 142 162 - -
Lal11g1326 283 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Lal11g1326 283 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 1 280 - -
Lal11g1326 283 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Lal11g1326 283 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Lal11g1326 283 MobiDBLite consensus disorder prediction 209 231 - -
Lal11g1326 283 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Lal11g1326 283 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Lal11g1326 283 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 280 - -
Lal11g1326 283 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Lal11g1326 283 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Lal11g1326 283 MobiDBLite consensus disorder prediction 142 181 - -
Lal11g1326 283 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1326 Lal-Chr11 16866525 16867376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1326 5 283 AP2-EREBP Transcription Factor Family AT3G57600 53.381 2.84e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal11g1326 AP2 3.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1326 - - gmx:100801311 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1326 11 16866525 16867376 Lal11g1326 11 16866525 16867376 ECH