Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1321 ATGGCTGACCCTTACTCTAATTTCCTCTCTTCCCCTTCTTCTTCACCTTTCTTCCAATTCAACCATTTCCCTTCTTCTTCTCCAAACCCTTCTCTACATCATCATCCACATCCCTATCTCCATAACTTCATCAACCCCTCAAAAAATGACACCTCCACCACCTTTTTACACTTTCATCACCACCACCACCACCTTCAAACTCAAACAACTACTTCTTATTTTTCACCTCCTTCTCCTCCTTTAAGAGAAGAACTTCCTCTCTTGACACAAAGCCCAGCAAAGCAAAAAGATAATAATAGTAATAATAATATTCATAATGAAGAACAAGACCAACAAGAACACCAACATCTACTCTCTTGCACTGCTATGGATGTTGAAGAGAGGATCTACCTTCATAAAGAAGAAGAACAAGAAGATGATACCACTGTTACTGTTGCACTTCACATAGGTTTACCAAACCCTAGTGCTGCTGAGATGGCATCTATGCTCTCCTCTAATAATTGTTCTTCAGAGATCACTGATAAAGAACAACATGGTGGTGGTGATGGTGGCAATGAGGATTCTTCTGGGTTCATGTTCAACAACAGACTCAACAAGGGACAGTACTGGATCCCTACTCCCTCTCAGATTCTCATTGGTCCTACTCAGTTCTCTTGTCCTGTTTGCTGCAAAACTTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGAGGTACACAACCAACAGCAATGTTAAGGCTTCCATGCTATTGTTGTGCACCAGGGTGCAGAAACAACATTGATCACCCTAGAACAAAGCCTCTAAAAGATTTTAGAACACTTCAAACACATTACAAGAGGAAGCATGGGATTAAACCCTTCATGTGTAGAAAATGTGGTAAGGCCTTTGCTGTGAGGGGTGATTGGAGAACACATGAAAAGAATTGTGGGAAGCTTTGGTATTGTATTTGTGGTTCTGATTTCAAGCATAAGAGGTCACTTAAAGATCATATAAAAGCTTTTGGAAATGGCCATGCAGCTTATGGGATTGATGGCTTTGAAGAAGAAGATGAACCAGCTTCTGAAGTAGAGCAAGATAATGATGATTCCACCACCCAGTAA 1143 0.4103 MADPYSNFLSSPSSSPFFQFNHFPSSSPNPSLHHHPHPYLHNFINPSKNDTSTTFLHFHHHHHHLQTQTTTSYFSPPSPPLREELPLLTQSPAKQKDNNSNNNIHNEEQDQQEHQHLLSCTAMDVEERIYLHKEEEQEDDTTVTVALHIGLPNPSAAEMASMLSSNNCSSEITDKEQHGGGDGGNEDSSGFMFNNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCRNNIDHPRTKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGIDGFEEEDEPASEVEQDNDDSTTQ 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1321 380 ProSitePatterns Zinc finger C2H2 type domain signature. 219 239 IPR013087 -
Lal11g1321 380 PANTHER ZINC FINGER PROTEIN WIP2 59 376 IPR043584 GO:0003700|GO:0010468
Lal11g1321 380 Gene3D Classic Zinc Finger 216 239 - -
Lal11g1321 380 Gene3D Classic Zinc Finger 279 354 - -
Lal11g1321 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 217 244 IPR013087 -
Lal11g1321 380 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 59 376 - -
Lal11g1321 380 SMART c2h2final6 301 321 IPR013087 -
Lal11g1321 380 SMART c2h2final6 217 239 IPR013087 -
Lal11g1321 380 SUPERFAMILY beta-beta-alpha zinc fingers 283 321 IPR036236 -
Lal11g1321 380 MobiDBLite consensus disorder prediction 361 380 - -
Lal11g1321 380 MobiDBLite consensus disorder prediction 92 115 - -
Lal11g1321 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 301 321 IPR013087 -
Lal11g1321 380 MobiDBLite consensus disorder prediction 168 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1321 Lal-Chr11 16807091 16809747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1321 1 380 C2H2 Transcription Factor Family AT3G57670 60.741 2.25e-144 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal11g1321 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1321 - - gmx:100813583 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1321 11 16807091 16809747 Lal11g1321 11 16807091 16809747 ECH
Lal11g1321 11 16807091 16809747 Lal25g0391 25 2631289 2634125 ECH
Lal11g1321 11 16807091 16809747 Lal10g1050 10 17541850 17544935 ECH
Lal11g1321 11 16807091 16809747 Lal1g1700 1 19447748 19450702 LSH
Lal11g1321 11 16807091 16809747 Lal20g0246 20 1743025 1745994 LSH