Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1316 ATGGAGATAGATAATAGTAAGAGTAGTGATGTGAGGTCAAAGAAGATGGAAGATTATGAAGTGATAGAGCAAATTGGTAGAGGGGCATTTGGTTCTGCCTTTCTGGTTCTTCACAACTCTGAGAAAAAGAGGTATGTGCTGAAAAAGATCCGCTTGGCGAAGCAAACAGAGAAATTCAAAATGACAGCACACCAAGAGATGAACCTGATTGCAAAACTAAAAAATCCATATATCGTTGAGTACAAAGATGCTTGGGTGGAGAAAGAGGACCATCTATGCATTATAACTGGATATTGTGAAGGAGGTGACATTGAGGACAAGGTTCATTCTTTGGAGGGAGGTGTTGTTAGGATCCAAGAGAAGCCTCCACTTTGGAAGGATGTTTTAAATCTGAACAGACATGAAGTCCTACTCATGAAACACTGCCTTTTTGTGTGGAGCAGGGCTGAGAAAATAAAGAGAGCTCGAGGATCATTATTTCCCGAAGAGAAGGTCTGCAAATGGCTGACTCAATTGTTGATAGCTGTGGATTACTTGCACTTTAATCGTGTAATCCACAGAGATCTTAAGTGTTCCAACATATTCCTCACTAAAGACAAGAACATTCGGCTTGGTGACTTTGGTCTTGCAAAGCGACTCAATGCCGAAGACCTTACTTCCTTGGTTGTTGGAACTCCAAGTTACTTGTGTCCTGAGCTCCTTGCTGATATACCATATGGTTATAAATCTGATATGTGGTCACTTGGTTGCTGCTTGTTTGAGATTGCTGCACATCAACCTGCGTTTCGTGCTCCGGACATGGCTGGACTTATCAATAAAATAAAAAGATCCTCCATTTCTCTACTGCCAATTGTTTATTCTTCCACACTGAAACAAATTATCAAGAGCATGCTGAGGAAAAATCCAGAACATAGACCAACAGCAGCTGAACTGTTAAGACATCCTCATTTACAACCTTATGTTCTTCGCTGTCATAATGCATCATCTAATGTTCTTCCAGTACGTCCCTTAGTTAACTCAACGGATAAAATAAGATCACCTCATAAATCTAGTGGTGTCAAGGACCATGGGGATAAAGAATCTGGATTAGTAAATTGTTTGGATCGGGTTCTTCCAATTGAGGGAAATGGAGATGTACAGCCAAGCAAAATTCGTAATGACGGTGAGCTAGCAGTCTCAACCAGTGCAGAAGACAACTTTGAGACCAAGATAGTTTATCTTACCAGCTGCACAGTGGAATCTTCTACTAGTATCCGTGCCTCAAAAGATGGGTCAACGGCATCTGAACCAACTGTTAGAAAGGACACGGACTTTAAAAGTAGACCCACAAGGGAATTAGTCGACAGCGAGATCATTTCAATGAGTACACAAGATTTTGTTCGCGTGGAACAAGGACTTGCTCTTGAACATTTTCAGAAATTAGAAGTGTTTGACATAAACGCAGTGACTGCAATAGGTGAAGATTATTTTTCCAATGAAGGTTTTGATAATTTTGAAGCACATAGGATAGATGCCAAACTTGAGGACTCTGGGAAATCAACAATGTCCAGTGCAGGCAGTAGCAGCACTGATAAAGATAAGTCCATTGATACAGCCAGCACTAATAAAGATAAGTCCACTGATGAGGAAAATTCATCACTACTTGTGCATCCTATTAATGCTGAAAATGACACAGTATCTGAAAACTGCTTTCCGAAAAACGTAAAAGCCGATGTTTTTACTGAAGTTTCACATATAAACTGCGTAACATCTGAGAGGAATGACACACTTCCATTTAAGGATGAAGACACAGCAAAATCACACCCAACTACTTTTCCCATGGGTGAAGATGATAGCACTGTTGTGGTTGATCAGACACTGAGTGGCATTTCATTGAATACGGTTATTGCAGTTGGTTCCGATGAAACAACCAAGACTACATTGGATAATCCATTGCAGCAAAGAGCTGATGCTTTGGAATCTCTGCTTGAGTTATGTGCTCAGTTACTTAAGCAAGATAAACTTGAAGAGCTTGCTGGTGTGCTAAGACCATTTGGAAAAGAAGCTGTCTCATCCAGAGAAACAGCAATATGGCTGACAAAGAGCCTCTTATCTGCTCAAAAGTTTAATCCTAACACCTAG 2121 0.405 MEIDNSKSSDVRSKKMEDYEVIEQIGRGAFGSAFLVLHNSEKKRYVLKKIRLAKQTEKFKMTAHQEMNLIAKLKNPYIVEYKDAWVEKEDHLCIITGYCEGGDIEDKVHSLEGGVVRIQEKPPLWKDVLNLNRHEVLLMKHCLFVWSRAEKIKRARGSLFPEEKVCKWLTQLLIAVDYLHFNRVIHRDLKCSNIFLTKDKNIRLGDFGLAKRLNAEDLTSLVVGTPSYLCPELLADIPYGYKSDMWSLGCCLFEIAAHQPAFRAPDMAGLINKIKRSSISLLPIVYSSTLKQIIKSMLRKNPEHRPTAAELLRHPHLQPYVLRCHNASSNVLPVRPLVNSTDKIRSPHKSSGVKDHGDKESGLVNCLDRVLPIEGNGDVQPSKIRNDGELAVSTSAEDNFETKIVYLTSCTVESSTSIRASKDGSTASEPTVRKDTDFKSRPTRELVDSEIISMSTQDFVRVEQGLALEHFQKLEVFDINAVTAIGEDYFSNEGFDNFEAHRIDAKLEDSGKSTMSSAGSSSTDKDKSIDTASTNKDKSTDEENSSLLVHPINAENDTVSENCFPKNVKADVFTEVSHINCVTSERNDTLPFKDEDTAKSHPTTFPMGEDDSTVVVDQTLSGISLNTVIAVGSDETTKTTLDNPLQQRADALESLLELCAQLLKQDKLEELAGVLRPFGKEAVSSRETAIWLTKSLLSAQKFNPNT 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1316 706 CDD STKc_Nek 18 317 - -
Lal11g1316 706 Gene3D Transferase(Phosphotransferase) domain 1 149 357 - -
Lal11g1316 706 SMART serkin_6 19 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal11g1316 706 Pfam Protein kinase domain 152 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal11g1316 706 Pfam Protein kinase domain 19 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal11g1316 706 MobiDBLite consensus disorder prediction 510 528 - -
Lal11g1316 706 Gene3D Phosphorylase Kinase; domain 1 2 98 - -
Lal11g1316 706 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 149 533 - -
Lal11g1316 706 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 13 106 - -
Lal11g1316 706 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 545 689 - -
Lal11g1316 706 SUPERFAMILY Protein kinase-like (PK-like) 16 347 IPR011009 -
Lal11g1316 706 ProSiteProfiles Protein kinase domain profile. 19 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal11g1316 706 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Lal11g1316 706 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Lal11g1316 706 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 149 533 - -
Lal11g1316 706 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 545 689 - -
Lal11g1316 706 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 13 106 - -
Lal11g1316 706 MobiDBLite consensus disorder prediction 341 360 - -
Lal11g1316 706 MobiDBLite consensus disorder prediction 417 440 - -
Lal11g1316 706 MobiDBLite consensus disorder prediction 509 545 - -
Lal11g1316 706 MobiDBLite consensus disorder prediction 529 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1316 Lal-Chr11 16784930 16791173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1316 25 318 MAP Kinase Kinase Kinase AT1G53570 27.759 4.21e-28 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lal11g1316 Pkinase 1.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1316 K08857 - gmx:100793379 902.894
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1316 11 16784930 16791173 Lal11g1316 11 16784930 16791173 ECH
Lal11g1316 11 16784930 16791173 Lal20g0243 20 1718134 1724102 LSH