Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1315 ATGCCGCAGAAGAATAAAGCTAGGGTTTCTAACGATGAACAAATGGAAGAAATTGAACATCAATCCACCCTCTACGAGGTTCTTGGTGTGGAGAGAACAGCATCTCAACAGGAAATAAAGAAGGCATATCATAAATTGGCATTGCGCCTTCATCCTGATAAGAACCCTCATGATGTGGAAGCTAAAGAGAAATTCCAGCAACTGCAAAAAGTGATATCAATTCTCGGGGACGAAGAGAAACGGGCCCTTTATGATCAGACTGGTTGTGTTGATGATGATGACCTTGCTGGAGACGTTGTTCAGAATCTTCGTGAGTTTTTCAGAACAATGTACAAGAAGGTGACTGAAGCTGATATCCAGGAGTTTGAAGCAAACTATAGGGGATCTGACTCAGAGAAAACTGATTTGATTGATCTTTACAAGAAGTGCAAGGGTAATATGAACAGGCTTTTCTGTTCGATGCTGTGTTCAGATCCTAAACTGGACTCACACAGATTCAAGGATATTCTTGATGAGGCTATAGATGCTGGAGAAATTAAGTCAAGAAAAGCCTACCAGAAATGGGCAAAGGAAGTATCTGAAACCAAACCACCAACAAGTCCTTTAAGGAGGAGGGCAAAGTCAAGAAAGCAGCCGGAAACTGATCTGTATGCCATCATATCACAACGCCGAAATGAGAGGAAAGGCCAGTTCGATTCAATGTTCTCCTCTCTAGTTTCAAAATATGGCGGAGGTGATATACCTGAACCCTCTGAGGAGGAATTTGAAGCTGCCCAGAGAAAGCTGGAGAGCAGTTCCTCTAAAAAATCAAAGAAATCAAAGCAGAAGTAA 831 0.42 MPQKNKARVSNDEQMEEIEHQSTLYEVLGVERTASQQEIKKAYHKLALRLHPDKNPHDVEAKEKFQQLQKVISILGDEEKRALYDQTGCVDDDDLAGDVVQNLREFFRTMYKKVTEADIQEFEANYRGSDSEKTDLIDLYKKCKGNMNRLFCSMLCSDPKLDSHRFKDILDEAIDAGEIKSRKAYQKWAKEVSETKPPTSPLRRRAKSRKQPETDLYAIISQRRNERKGQFDSMFSSLVSKYGGGDIPEPSEEEFEAAQRKLESSSSKKSKKSKQK 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1315 276 Gene3D DnaJ domain 7 99 IPR036869 -
Lal11g1315 276 MobiDBLite consensus disorder prediction 189 215 - -
Lal11g1315 276 MobiDBLite consensus disorder prediction 242 276 - -
Lal11g1315 276 ProSiteProfiles dnaJ domain profile. 23 88 IPR001623 -
Lal11g1315 276 SMART dnaj_3 22 80 IPR001623 -
Lal11g1315 276 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 3 274 - -
Lal11g1315 276 SUPERFAMILY Chaperone J-domain 22 94 IPR036869 -
Lal11g1315 276 MobiDBLite consensus disorder prediction 197 212 - -
Lal11g1315 276 MobiDBLite consensus disorder prediction 253 270 - -
Lal11g1315 276 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 3 274 IPR042977 -
Lal11g1315 276 CDD DnaJ 23 77 IPR001623 -
Lal11g1315 276 Pfam DnaJ domain 24 85 IPR001623 -
Lal11g1315 276 PRINTS DnaJ domain signature 25 43 IPR001623 -
Lal11g1315 276 PRINTS DnaJ domain signature 43 58 IPR001623 -
Lal11g1315 276 PRINTS DnaJ domain signature 60 80 IPR001623 -
Lal11g1315 276 PRINTS DnaJ domain signature 80 99 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1315 Lal-Chr11 16781273 16783534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1315 25 85 C2H2 Transcription Factor Family AT1G74250 40.909 1.17e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1315 K09529 - gmx:100793909 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1315 11 16781273 16783534 Lal11g1315 11 16781273 16783534 ECH
Lal11g1315 11 16781273 16783534 Lal20g0242 20 1712908 1716345 LSH