Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1301 ATGGCTTCGAGATTCTGGACACAGGGTGCTAGTGATTCTGAGGAGGAGGAGGGAAGTGATTATAATAATGAGGAGATTGAAAATGAAACAACAGGTGAACCTTCTAATCTAGCTGACAAGTACATCCGGGGTAATGCAAGTGACAGTGATGACTCCGATAGCGAAAAACGTGTCGTCAGGTCTGCAAAAGATAAGCGTTTTGAGGAGATGACTCTTACTGTTGACCAAATGAGAAATGCCGTGAAGATTAATGATTGGGTCAGTTTACAAGAGAGCTTTGACAAGATCAACAAACAGCTTGAGAAAGTCATGCGTGTTACCGAGTCTGATAAGGTTCCCAGTCTTTATATTAAGGCTCTTGTGATGTTGGAAGATTTCTTGGCTCAGGCTTTGGCAAATAAGGAAGCCAAAAAGAAGATGAGTAGTAGCAATGCCAAGGCCTTGAACTCTATGAAGCAAAAATTGAAGAAAAACAATAAGCAATATGAGAACTTGATTAATAAGTGTCGGGAGAGTCCTGAGAGTGAGGACGAAAAGGTTGAAGATGAGGAGTCAGAGGAAGAATATGAGAGCGATGATGAGATTATTGAGCCGAATCAACTTAGCAAGAATGTTAAAAAATTGGATTCCGAAGCTGATGGATATGATGATGATAAGGCAGATACTGACGATGGACCGTGGGATCAAAAGCTTAGCAAGAAAGATAGGCTTTTGGATAGGCAATTTATGAAAGACCCGAGCGAGATTACTTGGGACACAGTTAACAAGAAATTCAAAGAGGTTGTGGCAGCTAGGGGCAAGAAGGGAACCGGAAGGTTTGAGCAGGTTGAGCAGCTTACATTCTTAACGAAAGTTGCTAAAACACCCGCACAAAAGCTGGAAATTCTTTTTAGTGTTGTTTCTGCGCAGTTTGATGTTAATCCCGGCCTTAGTGGGCATATGCCCATAAATGTGTGGAAAAAATGTGTGCAGAACATGCTGATCATTCTTGATATCCTAGTGCAGTACCCAAACATAGTGGTTGATGATTCAGTGGAGGCAGATGAGAATGAAACTCAGAAAGGGGCTGACTATAATGGACCAATTCATGTTTGGGGTAACTTAGTTGCTTTTTTGGAAAAAATGGATGTTGAGTTTTTCAAGAGCCTACAGTGCATAGATCCTCATACCCGTGAGTATGTTGAGAGACTTAGGGATGAGCCTGTGTTTCAGGTTCTTGCTCAGAATGTTCAGGAATATCTTGAAAGGAGTGGAGATTTCAAAGCTGCTTCTAAGGTAGCTTTGAGAAGGGTTGAACTTATTTACTACAAGCCACAAGAGGTTTATGATGCCATGAGAAAACTTGCTGAGCTGACAGAAGATGGGGATAATGAAGGGGTGGCAGGGGAGGAGTCCAAAGGGATTGATGCTACAAGAATTCCTACTGCCTTTGTTGTTACCCCAGAGCTTGTGCCCCGGAAACCAACCTTTTCTGAGAATAGCAGGACCCAAATGGATGTATTGGTATCTTTGATATACAAATATGGTGATGAGCGCACTAAAGCACGAGCAATGCTTTGTGATATATATCATCATGCACTTCATGATGAGTTCTCAATAGCCCGTGATCTGCTACTTATGAGCCATTTGCAGGATAGTGTTCAGCATATGGATGTCTCAGCACAGATACTTTTTAACAGGGCCATTTCACAGTTGGGTCTATGTGCTTTTCGAGTTGGACTGATTTCCGAAGCACATAGCTGTCTGTCTGAACTCTATTCTGGTGGTAGGGTGAAGGAGTTGCTTGCACAAGGTGTGTCACAAAGTCGGTATCATGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGGCGTCAAATGCCATATCATATGCACATAAATCTTGAGCTCCTGGAGTCGGTGCATCTTATATCTGCTATGCTGCTCGAAGTCCCCAATATGGCTGCCAATGTCCATGACTCAAAGCGAAAGATCATTAGTAAGAACTTTCGTCGCTTGCTTGAAGTCAGTGACAGACAATCATTCACTGGGCCACCCGAAAATGTCAGAGATCATGTTATGGCTGCCACGAGGGCTCTTACCAAGGGAGACTTCCAGAAAGCCTTTGATGTTATTGTGTCTCTCAATGTATGGAAATTTGTGAGAAATCAAGACACCGTGCTTGAAATGCTGAAGGACAAAATCAAGGAGGAAGCATTGAGGACATACCTCCTTACCTTCTCCTCATCTTATGATTCCCTGAGCTTGGATCAGCTCACAAAAATCTTTGACCTCTCTGTTCCTCACACTCACAGCATTGTTAGTAAGATGATTATCAATGAGGAGCTTCATGCAAGCTGGGACCAGCCAACTGGGTGCATTGTGTTCCAAGATGTTGAACACACTAGGTTGCAGGCGTTAGCATTCCAGTTGACCGAGAAATTAACTATCCTTGCAGAGAGTAATGAAAGAGCAACAGAGGCTAGGATAGGCGGTGGTGGATTGGATTTGCCTCTGAGGCGGAGAGACGGTCAGGACTATGCTGCTGCCACGGCTGCTGGTGGAACTGCCTCATTAGGTGGTGGTAGGTGGCAAGATTTCTCCCTTTCTCAGCCAAGGCAAGGCAGCGGCCGTGCAGGAGGATATGGTGGCGGCGGTGGAAGAGCGTTCAGTCAAGCAGGTGGGGGCTATTCAAGAGACCGAGCCAGACAAGGTTATCAGGGTACACGGTACCAAGATGCCTCATATGGAGGCTCAGGGAGGAGTCAAGGTGGTTCATCATTGAGGGGGGCCCATGGGGATATATCTACTCGTATGGTTAGCCTTAAGGGAGTTCATGCCTAA 2823 0.4456 MASRFWTQGASDSEEEEGSDYNNEEIENETTGEPSNLADKYIRGNASDSDDSDSEKRVVRSAKDKRFEEMTLTVDQMRNAVKINDWVSLQESFDKINKQLEKVMRVTESDKVPSLYIKALVMLEDFLAQALANKEAKKKMSSSNAKALNSMKQKLKKNNKQYENLINKCRESPESEDEKVEDEESEEEYESDDEIIEPNQLSKNVKKLDSEADGYDDDKADTDDGPWDQKLSKKDRLLDRQFMKDPSEITWDTVNKKFKEVVAARGKKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPINVWKKCVQNMLIILDILVQYPNIVVDDSVEADENETQKGADYNGPIHVWGNLVAFLEKMDVEFFKSLQCIDPHTREYVERLRDEPVFQVLAQNVQEYLERSGDFKAASKVALRRVELIYYKPQEVYDAMRKLAELTEDGDNEGVAGEESKGIDATRIPTAFVVTPELVPRKPTFSENSRTQMDVLVSLIYKYGDERTKARAMLCDIYHHALHDEFSIARDLLLMSHLQDSVQHMDVSAQILFNRAISQLGLCAFRVGLISEAHSCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLISAMLLEVPNMAANVHDSKRKIISKNFRRLLEVSDRQSFTGPPENVRDHVMAATRALTKGDFQKAFDVIVSLNVWKFVRNQDTVLEMLKDKIKEEALRTYLLTFSSSYDSLSLDQLTKIFDLSVPHTHSIVSKMIINEELHASWDQPTGCIVFQDVEHTRLQALAFQLTEKLTILAESNERATEARIGGGGLDLPLRRRDGQDYAAATAAGGTASLGGGRWQDFSLSQPRQGSGRAGGYGGGGGRAFSQAGGGYSRDRARQGYQGTRYQDASYGGSGRSQGGSSLRGAHGDISTRMVSLKGVHA 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1301 940 MobiDBLite consensus disorder prediction 854 940 - -
Lal11g1301 940 Coils Coil 145 172 - -
Lal11g1301 940 MobiDBLite consensus disorder prediction 196 214 - -
Lal11g1301 940 MobiDBLite consensus disorder prediction 1 62 - -
Lal11g1301 940 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 935 - -
Lal11g1301 940 MobiDBLite consensus disorder prediction 13 27 - -
Lal11g1301 940 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 873 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lal11g1301 940 MobiDBLite consensus disorder prediction 166 228 - -
Lal11g1301 940 MobiDBLite consensus disorder prediction 901 923 - -
Lal11g1301 940 MobiDBLite consensus disorder prediction 176 195 - -
Lal11g1301 940 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 723 811 - -
Lal11g1301 940 Pfam PCI domain 662 790 IPR000717 -
Lal11g1301 940 Gene3D - 728 797 IPR036388 -
Lal11g1301 940 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 935 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lal11g1301 940 ProSiteProfiles PCI domain profile. 622 794 IPR000717 -
Lal11g1301 940 MobiDBLite consensus disorder prediction 44 62 - -
Lal11g1301 940 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 47 653 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lal11g1301 940 SUPERFAMILY "Winged helix" DNA-binding domain 718 793 IPR036390 -
Lal11g1301 940 SMART PINT_4 723 811 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1301 Lal-Chr11 16675966 16680301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1301 1 938 Eukaryotic Initiation Factors Gene Family AT3G56150 67.872 0.0 1186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1301 K03252 - gmx:100805203 1408.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1301 11 16675966 16680301 Lal11g1301 11 16675966 16680301 ECH
Lal11g1301 11 16675966 16680301 Lal20g0223 20 1554786 1565242 LSH