Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1299 ATGGTTTTAAGAAATAGGATTTATGTTTTGATGCTTTTAGAGATGGATTCTGCGATTAAGCATGCTATTGTTGTCAAAGTCATGGGTCGAACTGGTTCTAGAGGACAGGTGACCCAGGTCAGGGTGAAATTTACGGATGATCAGAATCGTCTGATTATGAGGAATGTGAAAGGACCAGTGAGAGAAGGAGACATTCTCACCCTTCTTGAGTCTGAGAGGGAGGCAAGAAGTTTAAGCTTCAAGATTGAAATGAATTTTGATTAA 264 0.3977 MVLRNRIYVLMLLEMDSAIKHAIVVKVMGRTGSRGQVTQVRVKFTDDQNRLIMRNVKGPVREGDILTLLESEREARSLSFKIEMNFD 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1299 87 CDD S1_S28E 20 78 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lal11g1299 87 Hamap 30S ribosomal protein S28e [rps28e]. 15 79 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lal11g1299 87 PANTHER 40S RIBOSOMAL PROTEIN S28 15 78 - -
Lal11g1299 87 ProSitePatterns Ribosomal protein S28e signature. 70 78 IPR028626 -
Lal11g1299 87 Pfam Ribosomal protein S28e 19 78 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lal11g1299 87 Gene3D - 9 79 IPR012340 -
Lal11g1299 87 PANTHER 40S RIBOSOMAL PROTEIN S28 15 78 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lal11g1299 87 SUPERFAMILY Nucleic acid-binding proteins 16 79 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1299 Lal-Chr11 16668007 16669240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1299 15 78 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 89.062 8.21e-35 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1299 K02979 - oeu:111370442 122.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1299 11 16668007 16669240 Lal11g1299 11 16668007 16669240 ECH