Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1288 ATGGGAAACAATTGTGTTGGATCAAGAAACTCCAAAGATGGACTATTTCCTTATATTATTCTAAGGTCATTCTGGTTGTCACAAAGTACCAACCCAATTTCCAATGTAATATCACCTATGAAGGATATGAAGCATGAAAATGACAAAGAGTCTAAGCTTAGTTCAGAAGATCAAGTAAATCACATAAAGGAAGTAGTTAGAGAAGAGGAGTTTGCAAAACCAAAACCAAAGATGCTTCAAACTGTTAAGAGGGTAAAAACTGAAGGGCTTAAAGCAGATTCAGTGTTGCTGACAAAAAGTGGTAATTTGAAAGAGTACTATAATTTGGGAGTGGAACTTGGAAAAGGACAATATGGAATTACTTCCCTTTGCATTGAGAAAGCTACAGGGAAAAAATATGCATGCAAGTCCATTGCAAAAGTGAAGTTTCTGGTAGATGATGATGTGGAGGATGTGAGGAGGGAAATTCAGATAATGCACCACTTGGTAGGAAGTCCTAACGTGATCTCGATCGAAGACGCTTACGAGGACTCGGTTGCGGTTCATGTTGTGATGGAATTATGTGCAGGAGGTGAGTTGTTTGATAGGATTGTAGAAAAAGGGCATTACACAGAAAGAAAAGCAGCTAAGCTTGCAAAGACTATTGTTAGTGTTGTAGAGGCTTGCCATTCTCTCGGAGTAATGCATCGCGATCTTAAGCCGGAGAATTTTCTTTTCGTTGATGAGAAGGAAGACTCCACCCTTAAGGCAATAGATTTTGGAATGTCTGTTTTCTTCAAACCAGGAGATGTTTTCACTGACATGGTAGGAAGTCCTTATTATATCGCACCCGAAGTTCTATGCAAGAATTATGGACCAGAAGCAGATGTATGGAGTGCTGGAGTGATCATATACATTCTCTTATGTGGAACCCCTCCATTTTGGGGTGAATCCGAGCATGAGATATTCGAGGAGGTTTTGGATGGTGATCTTGATTTCTCTTCAGATCCTTGGCCAACTATCTCTGAAAGTGCAAAAGACTTGATCAGAAAGATGCTTGTTAAAGATCCTCGAAATCGAATAACAGCACATGAAGATTTCGAACAAAATATTAGGAATGGCCACCCTTGGATTCAGGTTGATGGAGTTGCACCAGACAAGCCTATTGACTCTGCAGTTTTGAGTCGCCTGAAACAATTTTCGGCAACGAACAAGCTCAAGAAAATGGCGCTGAGAATTATTGCAGAGAATCTCTCTGAAGAAGAAATTTCCGGATTGAAAGAAATGTTTAAGATGATAGACACAGACAACAGTGGCCAAATCACTTTTGAAAAACTGAAGATTGGAGTGAAAACATTTGGTGCTAATCTCACTGAATCTGAAATTTATGATCTAATGCAAATGACTCATATTCAATGGACCGGACATCTTCTCAACAATACAAATGTTGATAACAGTGGCACAATTGACTATGGAGAATTCTTAGCTGCAACATTGCATTTAAACAAAGTTGATAGGGAAAATCATCTAATGGAAGTGGCTACATCACTCAAGATGAACTTCAACAAGCTTGTGAAGAATAGACTTTACTGGATAGCTATTATGAGTTATAAACTTTACCAAGATGGCAGAATAGACTACAATGAATTTGTAGCTATGATGCAGAGAGGCAATGAAGATTTAAGTAAGAGTGATCAAAAGGGTACTACTAATTTTGGCATTGGATTTAGGGAGGCACTATCAGTATGTTAA 1731 0.3859 MGNNCVGSRNSKDGLFPYIILRSFWLSQSTNPISNVISPMKDMKHENDKESKLSSEDQVNHIKEVVREEEFAKPKPKMLQTVKRVKTEGLKADSVLLTKSGNLKEYYNLGVELGKGQYGITSLCIEKATGKKYACKSIAKVKFLVDDDVEDVRREIQIMHHLVGSPNVISIEDAYEDSVAVHVVMELCAGGELFDRIVEKGHYTERKAAKLAKTIVSVVEACHSLGVMHRDLKPENFLFVDEKEDSTLKAIDFGMSVFFKPGDVFTDMVGSPYYIAPEVLCKNYGPEADVWSAGVIIYILLCGTPPFWGESEHEIFEEVLDGDLDFSSDPWPTISESAKDLIRKMLVKDPRNRITAHEDFEQNIRNGHPWIQVDGVAPDKPIDSAVLSRLKQFSATNKLKKMALRIIAENLSEEEISGLKEMFKMIDTDNSGQITFEKLKIGVKTFGANLTESEIYDLMQMTHIQWTGHLLNNTNVDNSGTIDYGEFLAATLHLNKVDRENHLMEVATSLKMNFNKLVKNRLYWIAIMSYKLYQDGRIDYNEFVAMMQRGNEDLSKSDQKGTTNFGIGFREALSVC 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1288 576 CDD EFh 419 490 IPR002048 GO:0005509
Lal11g1288 576 SUPERFAMILY EF-hand 399 550 IPR011992 -
Lal11g1288 576 Gene3D - 378 557 - -
Lal11g1288 576 ProSiteProfiles Protein kinase domain profile. 107 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal11g1288 576 Gene3D Transferase(Phosphotransferase) domain 1 193 373 - -
Lal11g1288 576 Gene3D Phosphorylase Kinase; domain 1 110 192 - -
Lal11g1288 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Lal11g1288 576 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 2 60 504 - -
Lal11g1288 576 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 2 534 558 - -
Lal11g1288 576 Pfam Protein kinase domain 107 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal11g1288 576 Pfam EF hand 419 445 IPR002048 GO:0005509
Lal11g1288 576 ProSitePatterns Protein kinases ATP-binding region signature. 113 140 IPR017441 GO:0005524
Lal11g1288 576 CDD STKc_CAMK 107 370 - -
Lal11g1288 576 SMART serkin_6 107 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal11g1288 576 PANTHER SERINE/THREONINE-PROTEIN KINASE 60 504 - -
Lal11g1288 576 PANTHER SERINE/THREONINE-PROTEIN KINASE 534 558 - -
Lal11g1288 576 SMART efh_1 418 446 IPR002048 GO:0005509
Lal11g1288 576 ProSiteProfiles EF-hand calcium-binding domain profile. 414 449 IPR002048 GO:0005509
Lal11g1288 576 SUPERFAMILY Protein kinase-like (PK-like) 106 372 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1288 Lal-Chr11 16538355 16542097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1288 73 551 EF-hand Containing Proteins AT3G10660 64.706 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal11g1288 Pkinase 4.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1288 K13412 - gmx:100814475 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1288 11 16538355 16542097 Lal2g1092 2 7711820 7717842 PCT
Lal11g1288 11 16538355 16542097 Lal9g1009 9 7853900 7858537 PCT
Lal11g1288 11 16538355 16542097 Lal1g0982 1 7505602 7510746 PCT
Lal2g1092 2 7711820 7717842 Lal11g1288 11 16538355 16542097 PCT