Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1283 ATGAACAACACAACCAATTCTTCTTTACTCCATAACTCTCTTAACCTCAGCAACTATGGCTATGGCATAGCAATTTCCATTGGAATCATTATCCTTATTCTAACCATAAGTCTCAGCTTATATTTCTGCACTAGATCACAAATGCTATCTTTACCACCAACTAATCTTATTACAGGAAGATATTTTACCCCTAATATGGCTCATTTATTTGAACCACAACACTCAAGAGTAGATGTGGGTTTAGATGAAGAAACTATTTTGAGTTATCCAAAGTTTTTGTATTGTGAAGCCAAGTTCAAGAAATTGTCTGATTCAACTGCAACATGTTGCATCATATGTTTGAGTGATTACAAGGAAAGTGATATGCTTCGAGTGTTACCAGATTGTGGTCATCAATTTCACCTAAATTGTATAGATCCATGGTTGAGATTGCATCCTACTTGTCCAGTTTGCAGAACTTCTCCAATGCCAACACCACTATAG 483 0.3582 MNNTTNSSLLHNSLNLSNYGYGIAISIGIIILILTISLSLYFCTRSQMLSLPPTNLITGRYFTPNMAHLFEPQHSRVDVGLDEETILSYPKFLYCEAKFKKLSDSTATCCIICLSDYKESDMLRVLPDCGHQFHLNCIDPWLRLHPTCPVCRTSPMPTPL 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1283 160 Pfam Ring finger domain 110 152 IPR001841 -
Lal11g1283 160 PANTHER RING-H2 FINGER PROTEIN ATL71-RELATED 1 160 - -
Lal11g1283 160 SMART ring_2 110 151 IPR001841 -
Lal11g1283 160 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 160 IPR045899 -
Lal11g1283 160 SUPERFAMILY RING/U-box 109 155 - -
Lal11g1283 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 157 IPR013083 -
Lal11g1283 160 CDD RING-H2_PA-TM-RING 109 152 - -
Lal11g1283 160 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1283 Lal-Chr11 16504041 16504523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1283 10 159 C3H Transcription Factor Family AT5G06490 46.988 5.76e-44 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1283 - - lang:109348287 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1283 11 16504041 16504523 Lal20g0202 20 1426636 1427163 LSH
Lal11g1283 11 16504041 16504523 Lal13g1305 13 11768882 11770480 PCT
Lal13g1305 13 11768882 11770480 Lal11g1283 11 16504041 16504523 PCT