Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1281 ATGATGAACATGAGTGATGAAATTGATGTTCCACCCTTCTTTCTATGCCCCATATCATTAGAAATAATGAAGGATCCAGTAACTATCTCCACTGGCATCACCTATGACCGAGAGAGCATAGAAAAATGGGTATTCTCTGGAAAAAACAAGTTATGTCCTGTTACCAAACAATCCTTATCAGATTTCATTGATTTCACTCCAAACCACACCCTCCGAAGACTTCTTCAAGCATGGTGTACCATGAATGCTTCTCATGGCATAGAAAGAATTCCAACACCAAAACCTCCTATCAACAAAATCCAAATAACCAAGATCCTCAAAGATGCTTATCATTCACCTCATTTGCAGATTAAATCTCTTAGAAAACTCAAATCCATCGCTTCCAGTAGCGAAACGAATAAACGTTGCATGGAGGATGCAGGTGCTATCGAATTCTTAGCATCAGTAATAAAAAACAACATCCACAACAATGATTCTTCAAGTGCTGATGATGAAGCCTTAAGTGTTCTTCATGATCTTCATATATCAGAAGATGGATTGAAGAGTCTCCTAGGCTTTAAAAATGGAGAGTTTATTCAGTCATTAACAAGGGTTATGCAAAAGGGTATTTATGAGTCACGAGTTTATGCAGTGTTCTTGTTGAAATCAATGTCTGAAGTGGCCGAACCAGTGCACTTATTCCATCTAAGGACCGAGTTGTTCATGGAGTTAGTGCATGTCTTAAAGGATCAGATTTCACAGAAGGCATCAAAAGCAACACTTCAGACACTGATACAAATGTGTCCTTGGGGCAGAAACAGGATCAAAGCTGTGGAAGCAGGTGCTGTTTCGGTTCTAATAGAGCTTCTTCTTGATTGCAAGGAAAGAAAACCTTGTGAGATGATGCTTGTGCTGTTGGAGTCTCTATGCCAGTGTGCTGAAGGAAGGGCTGAACTATTGAGCCATGGTGCAGGACTAGCCATAGTGTCCAAAAAGATTCTAAGGGTTTCAACTTTGGCAAATGATAGAGCTGTGAGGATTTTGTTGTCTGTTTCTAGATTCTCTGCAACGCCTAGTGTTGTTCAAGAAATGCTGAAACTTGGTGTGGTAACAAAACTTTGTTTGATGCTTCAAGTGGATAGTGGAAACAAGGCCAAGGATAAAGCAAGAGAGATACTAAAACTTCATGCTCGTGTATGGAGGGATTCTCCATGCATACCTAGCAGTTTACTTTCTTCATACCCAGCTTATGTGTGA 1236 0.4005 MMNMSDEIDVPPFFLCPISLEIMKDPVTISTGITYDRESIEKWVFSGKNKLCPVTKQSLSDFIDFTPNHTLRRLLQAWCTMNASHGIERIPTPKPPINKIQITKILKDAYHSPHLQIKSLRKLKSIASSSETNKRCMEDAGAIEFLASVIKNNIHNNDSSSADDEALSVLHDLHISEDGLKSLLGFKNGEFIQSLTRVMQKGIYESRVYAVFLLKSMSEVAEPVHLFHLRTELFMELVHVLKDQISQKASKATLQTLIQMCPWGRNRIKAVEAGAVSVLIELLLDCKERKPCEMMLVLLESLCQCAEGRAELLSHGAGLAIVSKKILRVSTLANDRAVRILLSVSRFSATPSVVQEMLKLGVVTKLCLMLQVDSGNKAKDKAREILKLHARVWRDSPCIPSSLLSSYPAYV 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1281 411 ProSiteProfiles U-box domain profile. 9 85 IPR003613 GO:0004842|GO:0016567
Lal11g1281 411 SUPERFAMILY RING/U-box 7 86 - -
Lal11g1281 411 Pfam U-box domain 10 82 IPR003613 GO:0004842|GO:0016567
Lal11g1281 411 PANTHER WDSAM1 PROTEIN 6 408 IPR045185 GO:0061630
Lal11g1281 411 SUPERFAMILY ARM repeat 103 376 IPR016024 -
Lal11g1281 411 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 6 408 - -
Lal11g1281 411 SMART Ubox_2 13 78 IPR003613 GO:0004842|GO:0016567
Lal11g1281 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 89 IPR013083 -
Lal11g1281 411 CDD RING-Ubox_PUB 14 57 IPR045210 -
Lal11g1281 411 Gene3D - 91 395 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1281 Lal-Chr11 16481539 16482774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1281 4 408 U-box Gene Family AT2G35930 58.680 1.28e-178 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1281 - - gmx:100811258 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1281 11 16481539 16482774 Lal11g1281 11 16481539 16482774 ECH
Lal11g1281 11 16481539 16482774 Lal1g1731 1 19746318 19747308 LSH
Lal11g1281 11 16481539 16482774 Lal20g0197 20 1384533 1385768 LSH
Lal11g1281 11 16481539 16482774 Lal13g1323 13 12156037 12157272 PCT
Lal13g1322 13 12124422 12125678 Lal11g1281 11 16481539 16482774 PCT