Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1280 ATGGGGACATACTATCATAGTAATTCGGAAATCCAAGGTGCTAGTGCTGATGGACTTCAAACACTCGTGCTCATGAATCCTGGCTACATTCACTACTCTGACGCGCCGCCACAGACACCACTTTCTCAAGCCCCCAACAACCTTGTTTTCCTCAACAATAATAATAACAACAACTTCAACCCTCACGCGCCACCACCGTCTCACCATACACAACAATTTGTTGGCATCCCTCTCTCCACCACAGCTGCTTCCTCCCAAGACCTTAACAACCACCACCACCACCACCACTCCTTGCACCCCCACCATGATGTGTCGGCTTTGCATGGCTTCATGGCACCTCGCATGCAGTACAACCTTTGGAACACAATTGACCCCAACTCTACGGCGCGTGAAACTCCACGCGCTCAGCAAGGGCTATCCCTGAGTCTTTCTTCTCAGCAAACTGGGTTTGGGTCTTTCCTGGTAGACCGTGAGGTTCCACCGGCGCAGGCTATATCCAATGATGACCTTCACGGCGGTTGCTCGCCGTCACCGGCTTCGGGAGCCATTAATGGTGGTGGTACAGGTATTCAGAGTGTGCTTTTGAGTTCAAAGTATTTGAATGCAGCACATGAGCTTTTGGATGAGGTGGTGAATGTGAACAATGGTATTAATACTGAATTGGCAAAGAAGAGTGGTGGTGGTGGTGGAGGGAACAAGGTGGTTGGTGAGTGTTCTGGAGCAGTTAGTGGAGAAGGTGGTGGTGGTTCAATTGGTGGAGAGAATAGTGGGAAACGTAGTTCTGATTTATCAAATGCAGAAAGACAAGAAATTCAAATGAAAAAGGCTAAGCTAATCAACATGCTTGATGAGGTGGAACAAAGGTATAGACAATACCATCACCAAATGGAGATTGTAGTTTCCTCATTTGAACAAGCTGCAGGGATTGAATCAGCAAGAACTTACACTTCTCTTGCATTGCAAACAATTTCGAGGAAATTTCGATGTTTAAAAGATGCCATAACATGTCAAATTCGAGCTGCAAATAAGAGTTTAGGAGAAGAAGATTGCTTTGGAGGTAAAATTGAAGGTTCTAGGCTCAAATATGTAGACAATCATCTAAGGCAACAAAGAGCTCTTCAACAATTGGGTATGATCCAACACAATGCTTGGAGACCCCAGAGAGGTTTGCCAGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAACACTTCCTCCATCCCTATCCCAAGGATTCAGATAAACACATGCTTGCAAAACAAACAGGACTTACTAGGAGCCAGGTTTCAAATTGGTTTATAAATGCTAGAGTTAGGCTTTGGAAGCCAATGGTAGAAGAAATGTACATGGAGGAGATGAAAGAGAATGAACAGAATAATGGTTCTGAGGACAAATCAAACAAGAGCAATGAAGACAAAGGACTAGCCAATGAAACTGAACCTAAAAGCTTGAATCACAAACATGTTTCTAAGAGCCTGAATACACCAACAACAACACCAATTGAGGAAAGTGTTAGAAACCAATCAGGACTCAGCTTCAATATTGGGTCATCAGAGCTACATGGTATTACACAACAAAGTCCTAAGAAACCAAGGAACAATGAAATTATGCATTCATCAAATAATGTTCCTTCAATGAACATGGATATCAAGCCCAATGAGCAACTTTCAATGAAATTTGGTGATGAGAGACAAGGCAGAGATGAGTACTCTTTTATGGGAAACCAAACAAACTTCATTGGTGGTTTTGGACAATACCCTATTGGTGATATTGGTAGGTTTGATGCAGAACAATTTACTCCAAGGTTTCAAGGTAATGGTGTTTCACTCACACTTGGTCTTGATTCCTTACCAGGAACACATCAAAATTTTCTCCAAAACCAAAGCATTCAACTTGGAAGAAGCATGGATATTAGTGAACAAAATGAGTTTGGTGCAATAAACACTTCTCCTTCTAACTCTACAGCTGCATTTGAGAATATCAACATGCAAAACCCAAAGAGATTTGCAGCACAATTGTTGCCAGATTTTGTGGCCTAA 2043 0.4268 MGTYYHSNSEIQGASADGLQTLVLMNPGYIHYSDAPPQTPLSQAPNNLVFLNNNNNNNFNPHAPPPSHHTQQFVGIPLSTTAASSQDLNNHHHHHHSLHPHHDVSALHGFMAPRMQYNLWNTIDPNSTARETPRAQQGLSLSLSSQQTGFGSFLVDREVPPAQAISNDDLHGGCSPSPASGAINGGGTGIQSVLLSSKYLNAAHELLDEVVNVNNGINTELAKKSGGGGGGNKVVGECSGAVSGEGGGGSIGGENSGKRSSDLSNAERQEIQMKKAKLINMLDEVEQRYRQYHHQMEIVVSSFEQAAGIESARTYTSLALQTISRKFRCLKDAITCQIRAANKSLGEEDCFGGKIEGSRLKYVDNHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKENEQNNGSEDKSNKSNEDKGLANETEPKSLNHKHVSKSLNTPTTTPIEESVRNQSGLSFNIGSSELHGITQQSPKKPRNNEIMHSSNNVPSMNMDIKPNEQLSMKFGDERQGRDEYSFMGNQTNFIGGFGQYPIGDIGRFDAEQFTPRFQGNGVSLTLGLDSLPGTHQNFLQNQSIQLGRSMDISEQNEFGAINTSPSNSTAAFENINMQNPKRFAAQLLPDFVA 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1280 680 MobiDBLite consensus disorder prediction 245 266 - -
Lal11g1280 680 CDD homeodomain 384 444 IPR001356 GO:0003677
Lal11g1280 680 Pfam Associated with HOX 193 335 IPR006563 -
Lal11g1280 680 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 6 630 - -
Lal11g1280 680 MobiDBLite consensus disorder prediction 454 488 - -
Lal11g1280 680 SUPERFAMILY Homeodomain-like 385 451 IPR009057 -
Lal11g1280 680 MobiDBLite consensus disorder prediction 454 550 - -
Lal11g1280 680 SMART prehox3 188 336 IPR006563 -
Lal11g1280 680 Pfam Homeobox KN domain 401 440 IPR008422 GO:0003677|GO:0006355
Lal11g1280 680 ProSiteProfiles 'Homeobox' domain profile. 381 444 IPR001356 GO:0003677
Lal11g1280 680 SMART HOX_1 384 448 IPR001356 GO:0003677
Lal11g1280 680 MobiDBLite consensus disorder prediction 489 550 - -
Lal11g1280 680 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 630 - -
Lal11g1280 680 Coils Coil 268 295 - -
Lal11g1280 680 Gene3D - 387 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1280 Lal-Chr11 16465886 16472383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1280 1 680 Homeobox Transcription Factor Family AT2G35940 49.141 1.27e-168 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lal11g1280 POX 1e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1280 - - lang:109348289 1023.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1280 11 16465886 16472383 Lal11g1280 11 16465886 16472383 ECH
Lal11g1280 11 16465886 16472383 Lal20g0196 20 1373857 1379264 LSH