Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1259 ATGAGCAAGAAAATGAAGCTCCTCTCTCTTCTTAACAACAACAACACAGAAGTTAAGTTCTCTTCTTCTTCATCATGGCCATGGCTTTCATGTCACCAACCAAGAACCCTATCTTTTAGAGCCAACAATAATGTAACATTCAAAACCATTAACTCAACCTATTTAGATGCCACCATGGACATTCTTGAAAGCTCTGAATCCTTTTTCACTGTTTCTACTCATTCTACAAGCTTCTCAACCAATTCTGATGATTCCAGATTACGTCAAGATTCAATAGAAACCGTTATTCGTGAATCACGCTCTGATCGTTTGTTCTTTGAGCCAGATGAGACTAACTCTATATTAGAAGCCAAAAGTGGAATAAGAGTTCCATTCAAAGATAGTGTTGTTGTATCCATGGATTCTCAAGACCCTTATGTGGATTTTCGAAAGTCTATGGAGGAGATTGTAGAGGCTCATGGTGTGAAATATTGGGAGGGTATTGAAAAGCTTTTTTGTTGGTATTTAAGGGTTAATGAGAAAAGTTGCCATGGTTATATTGTTAATGCTTTTGTTGATTTATTGTTTGGTCTTGAATTTGCTTCTTCTTCATGTGATTCTTGTTTCGAATCTGAGGAAAAGGTTGATAATATTACTAGTTCATCTTTGTTGTTAGAACAAGTTAAGATGATTAAACTTGAAGAAGAAACTTCTACTTCATCTTCAAATGTTTGA 714 0.3529 MSKKMKLLSLLNNNNTEVKFSSSSSWPWLSCHQPRTLSFRANNNVTFKTINSTYLDATMDILESSESFFTVSTHSTSFSTNSDDSRLRQDSIETVIRESRSDRLFFEPDETNSILEAKSGIRVPFKDSVVVSMDSQDPYVDFRKSMEEIVEAHGVKYWEGIEKLFCWYLRVNEKSCHGYIVNAFVDLLFGLEFASSSCDSCFESEEKVDNITSSSLLLEQVKMIKLEEETSTSSSNV 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1259 237 ProSiteProfiles OVATE domain profile. 131 190 IPR006458 -
Lal11g1259 237 Pfam Transcriptional repressor, ovate 135 191 IPR006458 -
Lal11g1259 237 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 5 204 IPR038933 GO:0045892
Lal11g1259 237 PANTHER OVATE TRANSCRIPTIONAL REPRESSOR 5 204 - -
Lal11g1259 237 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 129 191 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1259 Lal-Chr11 16268751 16269464 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lal11g1259 Ovate 2.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1259 - - ccaj:109813992 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1259 11 16268751 16269464 Lal12g0475 12 3403456 3404175 ECH
Lal11g1259 11 16268751 16269464 Lal24g0381 24 2752942 2753667 ECH
Lal11g1259 11 16268751 16269464 Lal11g1259 11 16268751 16269464 ECH
Lal11g1259 11 16268751 16269464 Lal20g0183 20 1279042 1279740 LSH
Lal11g1259 11 16268751 16269464 Lal13g1355 13 12772546 12773304 PCT
Lal13g1355 13 12772546 12773304 Lal11g1259 11 16268751 16269464 PCT