Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1243 ATGGAAGCCATACACATCTCTACCGTTGCCTCTCGCCATTTCTCCACTTCTTTCTCACACAACCGAACCTTCTCTTCTTCTTCTTCTTCTTCTTCTGCCAAACCAACCAACCTCTCTTCTCCATGGAAAACTTCTTCTTTTTCTTCTTCTTCCAAAAATAACTTGTTCTCGAATGAGGTTTGGGGTTGGGTCAAGTCCAAAAATGTCTCTGTCAGAAGAAAGCAGATTCTGCCCGGATTGATACGGGCAGAAATGTTCGGGCAGTTAACCACTGGTCTTGAGTCTGCTTGGAACAAGCTCAAAGGAGAAGAGGTTTTGACCAAAGAGAATATTTTTGAGCCTATGCGAGATATTAGGAGAGCTCTCTTGGAAGCAGATGTTAGCCTTCCTGTTGTCAGAAGGTTTGTGGAAGATGTCACCGATCAGGCTGTGGGTGTTGGCGTAATTCGAGGAGTTAAACCAGATCAGCAATTGGTAAAGAACGAAATGGGTGTTGATCATTGGGTTTTGCAGATTGTACATGATGAACTAGTAAAGCTGATGGGTGGAGAGTTCTCTGAACTGGTTTTTGCCGAAACTGGGCCAACTGTCATTTTATTGGCAGGGCTACAAGGAGTTGGGAAGACGACTGGGAAAAGTTGCATGCTAGTCGCGGGGGATATTTACAGACCAGCTGCTATTGACCAACTTGCTATTTTGGGTAAAAAGGTGGGTGTGCCGGTCTATACAGCAGGTACTAATGTTAAACCTTCAGAAATTGCTAAACAAGGTTTAGAAGAGGCAAAAAAGAAGAACATCGATGTGGTTGTTGTTGACACTGCTGGTAGGCTGCAGATAGACAAAGCAATGATGGATGAGTTAAAAGAAGTGAAGCGGGTATTGAATCCAACAGAAACTTTGCTGGTTGTGGATGCAATGACGGGGCAAGAAGCAGCAGCTTTGGTTTCTAGTTTCAATCTTGAGATTGGAATAACAGGTGCGATCTTGACCAAGCTAGACGGCGATTCAAGAGGTGGAGCAGCTTTGAGTGTCAAAGAGTATCGCTGCTACCTTGCATTTGTTCTCGTCTTAAGCAATATTAGCCATTCCATAGTAGAACTTTTAACATGCAAGCTCTTCGAAATATCTGGAAAGCCAATTAAGCTGGTAGGACAGGGGGAACGCATGGAAGATCTTGAACCTTTCTACCCTGAGCGAATGGCTGGACGTATACTCGGAATGGGAGATGTTCTTTCGTTTGTAGAGAAGGCAAAAGAAGTTATGCAACAAGAAGATGCCGAAGAACTGCAAAAGAAGATCACGAGTTCAAAGTTTGACTTTAATGATTTTCTAAAGCAAACTCGTGCTGTTGCACGAATGGGTTCCGTGTCTCGTGTGATTGGAATGATCCCTGGTATGGGGAAGGTCACTCCTGCTCAAATTCGAGAAGCAGAGAAGAATTTGAAGATAATGGAGGCAATGATAGAAAAAATGACCCCCGAGGAGAGGGAAAAGCCAGAACTGTTGGCAGAATCACCTTTCAGGAGGAAAAGGGTTGCCAAGGATTCAGGGAAAACAGAGCAGCAGGTAAGCCAACTCGTGGCTCAAATCTTCCAAATGCGTGTTCGTATGAAGAAACTGATGGGTGTAATGGAAGGTGGATCAATGCCAACTCTTAGTAATCTACAGGACGCGCTTAAAACTGAGGAAGAGGCTCCATCTGGTACATCAAGGAGGAGGAAGAAGTCGGAATCGAGGAAACAATTCGCGGACTCAACATCAACACGGCCAGCTCCGCGTGGTTTCGGGAGCAAAAGTTAG 1800 0.4472 MEAIHISTVASRHFSTSFSHNRTFSSSSSSSSAKPTNLSSPWKTSSFSSSSKNNLFSNEVWGWVKSKNVSVRRKQILPGLIRAEMFGQLTTGLESAWNKLKGEEVLTKENIFEPMRDIRRALLEADVSLPVVRRFVEDVTDQAVGVGVIRGVKPDQQLVKNEMGVDHWVLQIVHDELVKLMGGEFSELVFAETGPTVILLAGLQGVGKTTGKSCMLVAGDIYRPAAIDQLAILGKKVGVPVYTAGTNVKPSEIAKQGLEEAKKKNIDVVVVDTAGRLQIDKAMMDELKEVKRVLNPTETLLVVDAMTGQEAAALVSSFNLEIGITGAILTKLDGDSRGGAALSVKEYRCYLAFVLVLSNISHSIVELLTCKLFEISGKPIKLVGQGERMEDLEPFYPERMAGRILGMGDVLSFVEKAKEVMQQEDAEELQKKITSSKFDFNDFLKQTRAVARMGSVSRVIGMIPGMGKVTPAQIREAEKNLKIMEAMIEKMTPEEREKPELLAESPFRRKRVAKDSGKTEQQVSQLVAQIFQMRVRMKKLMGVMEGGSMPTLSNLQDALKTEEEAPSGTSRRRKKSESRKQFADSTSTRPAPRGFGSKS 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1243 599 MobiDBLite consensus disorder prediction 583 599 - -
Lal11g1243 599 PANTHER BNAC02G02820D PROTEIN 59 347 - -
Lal11g1243 599 PANTHER BNAC02G02820D PROTEIN 373 597 - -
Lal11g1243 599 CDD SRP_G 196 404 - -
Lal11g1243 599 Gene3D - 188 414 IPR027417 -
Lal11g1243 599 SUPERFAMILY Signal peptide-binding domain 437 538 IPR036891 GO:0006614|GO:0008312|GO:0048500
Lal11g1243 599 SMART SRP54_3 195 406 IPR000897 GO:0005525|GO:0006614
Lal11g1243 599 MobiDBLite consensus disorder prediction 19 52 - -
Lal11g1243 599 MobiDBLite consensus disorder prediction 494 523 - -
Lal11g1243 599 MobiDBLite consensus disorder prediction 547 599 - -
Lal11g1243 599 MobiDBLite consensus disorder prediction 564 582 - -
Lal11g1243 599 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 59 347 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Lal11g1243 599 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 373 597 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Lal11g1243 599 SMART SRP54_N_2 85 181 IPR013822 GO:0005525|GO:0006614
Lal11g1243 599 Gene3D - 85 185 IPR042101 -
Lal11g1243 599 Pfam SRP54-type protein, helical bundle domain 89 160 IPR013822 GO:0005525|GO:0006614
Lal11g1243 599 Gene3D - 417 541 IPR036891 GO:0006614|GO:0008312|GO:0048500
Lal11g1243 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 464 IPR027417 -
Lal11g1243 599 Pfam SRP54-type protein, GTPase domain 195 346 IPR000897 GO:0005525|GO:0006614
Lal11g1243 599 MobiDBLite consensus disorder prediction 494 517 - -
Lal11g1243 599 Pfam Signal peptide binding domain 437 535 IPR004125 GO:0006614|GO:0008312|GO:0048500
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1243 Lal-Chr11 16162618 16168216 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1243 K03106 - tcc:18598256 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1243 11 16162618 16168216 Lal11g1243 11 16162618 16168216 ECH
Lal11g1243 11 16162618 16168216 Lal20g0173 20 1193443 1200911 LSH