Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1242 ATGACTGGAACAAGACAGAGACAAAATCCAGAATCCCCAGAGGGGAACAGTGAGCATGAGAAACCTACAGATTCTGATGAGCAGGTAGACCTTGATGGGGACAATGATCAAGAAGAAGAGGAAGAGGAAGAAGTTGAGTATGAAGAAATTGAGGTGGAGGAAGAAGTGGAAGAGGAGGAGGAGGAAGAAGAAGAAGGGGAAGAGACTAAGGATGATAGAGAGGAGATGAATGTGCCTGATACTAAGGATGAAGATGAGAAAAGGAAACATGCTGAGTTTCTTGCTCTTCCACCACATGGGTCAGAGGTCTACCTTGGTGGCATTCCTTACAAAATTTCTGAAGAAGATTTGAGGGTTTTTTGTCAATCCGTCGGAGAAGTTTCAGAAGTTAGGATTATGAAGGGAAAAGATTCAGGTGAAACAAAAGGTTATGCTTTTGTTACTTTCAAGACAAAGGAATTGGCTTCTAAGGCTATTGAGAAATTGAACAATTCTGAATTTAAGGGAAAAAAGTTGAAGTGTTCAACAGCTCAAGCTAAGCATAAGTTGTTCATTGGTAATGTTCCTAGAAATTGGACAGTAGATGATTTGAAAAAAGTTGTTGCAGGGATTGGGCCTGGAGTCATTTCTGTGGAACTGTTGAAGGATCCACAGAATTCTGGTCGTAACAGGGGATTTGCTTTTATTGAGTATTACAATAATGCTTGTGCAGAATATTCACGGCAGAAGATGTCAGACTCAAAATTTAAACTTGACAACAATGCTCCAACAGTGAGCTGGGCTGACCCAAGGAATTCTGAATCGCCTGCATCATCCCAGGTAAAATCAGTGTACATAAAGAACCTTCCAGAAAACATTACTCAGGATCGTCTTAAGGAGCTGTTTGAACATCACGGGAAGATCACAAAAGTGGTTCTCCCTCCTGCAAAAGCAGGACAAGAGAAGAGCAGATTTGGTTTTGTGCACTTTGCTGAAAGGTCAAGTGCCATGAAAGCATTGAAGAATACAGAGAAATATGAAATTAATGGCCAAGCTTTGGAGTGTTCACTTGCAAAGCCACAAGCAGACCAGAAATCATCTGGGGCATCAAACTCACAGAAGCCAGTTGCACTCCCCACTTATCCACCTTATCATGGTTATGGCATGGTTGGAGCCAGTGCCTATAATGCTTTTGGTGCAGGATATGGTGCTGCTGGCTTCTCACAACCGCTGATGTACGGTGCGGGAGCTTCCCCTGCTGGCATGGCAATGATGCCAATGCTTTTACCGGACGGAAGGATTGGATATGTATTGCAACAGCCAGCATTGCAACCGCACACTCCTACTCCAGCATCCCGACACGGCAGGAATAGTGGTGATAGCTCAAGTGGTGGGAAACGCAGTAATGACAGTAACCATAACCGTGGGCGTGGCCGATTCCATCCCTACTAA 1431 0.4389 MTGTRQRQNPESPEGNSEHEKPTDSDEQVDLDGDNDQEEEEEEEVEYEEIEVEEEVEEEEEEEEEGEETKDDREEMNVPDTKDEDEKRKHAEFLALPPHGSEVYLGGIPYKISEEDLRVFCQSVGEVSEVRIMKGKDSGETKGYAFVTFKTKELASKAIEKLNNSEFKGKKLKCSTAQAKHKLFIGNVPRNWTVDDLKKVVAGIGPGVISVELLKDPQNSGRNRGFAFIEYYNNACAEYSRQKMSDSKFKLDNNAPTVSWADPRNSESPASSQVKSVYIKNLPENITQDRLKELFEHHGKITKVVLPPAKAGQEKSRFGFVHFAERSSAMKALKNTEKYEINGQALECSLAKPQADQKSSGASNSQKPVALPTYPPYHGYGMVGASAYNAFGAGYGAAGFSQPLMYGAGASPAGMAMMPMLLPDGRIGYVLQQPALQPHTPTPASRHGRNSGDSSSGGKRSNDSNHNRGRGRFHPY 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1242 476 Coils Coil 35 76 - -
Lal11g1242 476 MobiDBLite consensus disorder prediction 72 88 - -
Lal11g1242 476 Gene3D - 23 181 IPR012677 -
Lal11g1242 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 263 IPR000504 GO:0003723
Lal11g1242 476 MobiDBLite consensus disorder prediction 12 28 - -
Lal11g1242 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 179 IPR000504 GO:0003723
Lal11g1242 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 353 IPR000504 GO:0003723
Lal11g1242 476 MobiDBLite consensus disorder prediction 436 476 - -
Lal11g1242 476 MobiDBLite consensus disorder prediction 29 71 - -
Lal11g1242 476 PANTHER GEO13361P1-RELATED 9 474 - -
Lal11g1242 476 MobiDBLite consensus disorder prediction 1 88 - -
Lal11g1242 476 SUPERFAMILY RNA-binding domain, RBD 98 263 IPR035979 GO:0003676
Lal11g1242 476 PANTHER - 9 474 - -
Lal11g1242 476 SUPERFAMILY RNA-binding domain, RBD 268 364 IPR035979 GO:0003676
Lal11g1242 476 MobiDBLite consensus disorder prediction 436 462 - -
Lal11g1242 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 173 IPR000504 GO:0003723
Lal11g1242 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 277 346 IPR000504 GO:0003723
Lal11g1242 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 250 IPR000504 GO:0003723
Lal11g1242 476 Gene3D - 182 262 IPR012677 -
Lal11g1242 476 SMART rrm2_1 102 175 IPR003954 GO:0003676
Lal11g1242 476 Gene3D - 264 381 IPR012677 -
Lal11g1242 476 CDD RRM_SF 103 175 - -
Lal11g1242 476 SMART rrm1_1 102 175 IPR000504 GO:0003723
Lal11g1242 476 SMART rrm1_1 276 349 IPR000504 GO:0003723
Lal11g1242 476 SMART rrm1_1 182 259 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1242 Lal-Chr11 16155111 16161125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1242 139 453 Eukaryotic Initiation Factors Gene Family AT2G23350 26.149 2.44e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1242 K13161 - gmx:100798476 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1242 11 16155111 16161125 Lal11g1242 11 16155111 16161125 ECH