Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1203 ATGCATAACAACACTTCTGCATCAAGTTCTCTTGATTCAGAAACTGGCCGCCACCCTTTGTACCGCGGTGTTAGGCGCAGGAGCAATGGAAAATGGGTTTCTGAAATCCGTGAACCTAAGAAACCTAATAGAATATGGTTAGGAACGTTTCCTACAGCAGAGATGGCTGCAATCGCTTATGATGTTGCTGCGCTTGCTCTTAAGGGTAAAAATGCTGAACTTAACTTCCCTAACTCGGCTTCTTCTTTACCTGTTCCTGCATCTTCCACTGCTCGCGATATTCAGATGGCTGCAGCTAGTGCTGCAGCCGCTATCGGGGCAGCGAAAGATGCTCTATCAAGTGGCGAAGGAAGTCGAGGAGGGGATACTTCGGTGTCACAAGAGATCAATATGGCTTCACGAAATGGGTTTGTTGATGAAGATTTAATCTTTGATATGCCAAATGTTTTGGTTAATATGGCTGAGGGAATGTTGCTTAGTCCTCCTCGTTTTGATGTTGGTGGTGGTGACTATGTTGACTATACTACACAGGAAAACATAGAGGAAGATCCAAATCTGTGGAGTTTCCCTTATTTCCAATATCCATAA 588 0.4439 MHNNTSASSSLDSETGRHPLYRGVRRRSNGKWVSEIREPKKPNRIWLGTFPTAEMAAIAYDVAALALKGKNAELNFPNSASSLPVPASSTARDIQMAAASAAAAIGAAKDALSSGEGSRGGDTSVSQEINMASRNGFVDEDLIFDMPNVLVNMAEGMLLSPPRFDVGGGDYVDYTTQENIEEDPNLWSFPYFQYP 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1203 195 MobiDBLite consensus disorder prediction 1 35 - -
Lal11g1203 195 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Lal11g1203 195 CDD AP2 19 79 IPR001471 GO:0003700|GO:0006355
Lal11g1203 195 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 190 - -
Lal11g1203 195 MobiDBLite consensus disorder prediction 1 15 - -
Lal11g1203 195 Gene3D AP2/ERF domain 20 78 IPR036955 GO:0003700|GO:0006355
Lal11g1203 195 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 5 190 - -
Lal11g1203 195 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
Lal11g1203 195 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Lal11g1203 195 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Lal11g1203 195 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Lal11g1203 195 SUPERFAMILY DNA-binding domain 20 79 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1203 Lal-Chr11 15777536 15778123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1203 16 190 AP2-EREBP Transcription Factor Family AT2G36450 60.317 3.85e-57 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal11g1203 AP2 4.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1203 - - gmx:100799620 255.758
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1203 11 15777536 15778123 Lal11g1203 11 15777536 15778123 ECH
Lal11g1203 11 15777536 15778123 Lal20g0139 20 924833 925417 LSH
Lal13g1413 13 13536759 13537322 Lal11g1203 11 15777536 15778123 PCT