Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1202 ATGGAGGATCATCACCATCAAGAATCACAGTATAGTATTAATGATCTCAGGCAGTTAATAGTGAATGGACCAACCTCAACAACCCATTTCCCCTCAATACCACCACCACCCACGGCGGAGCTCTTCCCTGGCCACCCAAATCTGACTACAGCCACCACTCACCATCAACACTATGAGATGATGATGTTTGGTCGCCAAGTAGAAGATATAATGCCTCGTTGCAGCCTTCATCATCATGACTTTACATCCACCAATTCTGCTGCCGCAGCCACCACCACTCCAACCACCATTACCGGTGGCTTAGAGGCTGAGACAGCAGGCTTCATAGGTGGAGATGCCTCCACTGGAAGATGGCCCAGACAGGAAACTCTTACTCTTCTTGAAATCAGATCTAGCTTGGACCCTAAGTTTAAAGAGGCTAATCAAAAGGGTCCTCTATGGGATGAAGTTTCTAGGATCATGTCTGAAGAGCACGGATACCAAAGGAGTGGGAAAAAGTGCAGAGAGAAGTTCGAGAACTTGTACAAATATTACAAGAAGACAAAAGAAGGTAAAGCAGGAAGACAAGATGGGAAGCATTACAGATTCTTTCGTCAACTTGAAGCCTTATATGGAGAAAACATTAACCAAACTTCAGTTCCAGAATCCAACTTTTGTACCAGTAGCGTTCCTTTTCATACAAGTAGCCATGTACCTTCTCAAACAAATCAAGAAATAATATATCAGTCTCATCACAAGCATTGTGATAGTCTCAGCCTCACTAACTCCACTGACTTTGATACTTCATCTTCTGATGACAATGACCATAGCATTGAAGGACTAAAGGACAATGGCTCCATGCAGAAGAGGCCAAAGAGGGTTAGTGGAAGGAGCTGGAAGGTAAAGATAAAAGAGTTCATTGACTCACAGATGAGGAAGTTGGTAGAGAAACAAGAGGAATGGATGGATAAGCTCATGAAGACAATGGAACAAAAGGAAAAGGAGAGATTGTTGAGAGAAGAAGAGTGGAGGAAACAAGAGGTTGAAAGGTTAGAAAGAGAGCATAAATTTTGGGCTAAAGAGAGAACATGGATTGAAGCTAGGGATATTGCTCTAATGCAAGCTTTGCAAAAATTAACAGGAAATGAGATTGAGCCTCAAACTCAATTATCTCTTGAGGGTATAAATGCAATTGCCACTGGAGTTCAAAACCAGAATGAAGATGGAGGAAGTGAAATACTAAATAGCACTACTGGTGTGAGAGGTTCTGAAAGTATCATCAGCAACAAGAAGAGAAAGGAAAACTCAAGTTGTTTTTATTTTGATGACATTAATGATCACAGGTCTAATTCTCTATATACAAAAGGAAGTGATGCCTATTGTGATATCAATGATCAAAGGCAAGAAATAAGTGAAAGGAGGCTACATACAAATGATGGTTCATCACCTTCAAATTCCAATGTTGGTAATGCAGTTCCTACTGCAGATAGCTGTTTTCCCTTCTTGATGAATGAGGGAGGGAATTTGTGGCAAAACTATAGCTTAAAGGTTAACAAAGGAAATCAAAACCAAAATCAGTGA 1560 0.409 MEDHHHQESQYSINDLRQLIVNGPTSTTHFPSIPPPPTAELFPGHPNLTTATTHHQHYEMMMFGRQVEDIMPRCSLHHHDFTSTNSAAAATTTPTTITGGLEAETAGFIGGDASTGRWPRQETLTLLEIRSSLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENINQTSVPESNFCTSSVPFHTSSHVPSQTNQEIIYQSHHKHCDSLSLTNSTDFDTSSSDDNDHSIEGLKDNGSMQKRPKRVSGRSWKVKIKEFIDSQMRKLVEKQEEWMDKLMKTMEQKEKERLLREEEWRKQEVERLEREHKFWAKERTWIEARDIALMQALQKLTGNEIEPQTQLSLEGINAIATGVQNQNEDGGSEILNSTTGVRGSESIISNKKRKENSSCFYFDDINDHRSNSLYTKGSDAYCDINDQRQEISERRLHTNDGSSPSNSNVGNAVPTADSCFPFLMNEGGNLWQNYSLKVNKGNQNQNQ 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1202 519 Gene3D - 118 180 - -
Lal11g1202 519 Pfam Myb/SANT-like DNA-binding domain 117 203 IPR044822 -
Lal11g1202 519 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 23 410 - -
Lal11g1202 519 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 421 513 - -
Lal11g1202 519 Coils Coil 308 347 - -
Lal11g1202 519 MobiDBLite consensus disorder prediction 262 283 - -
Lal11g1202 519 ProSiteProfiles Myb-like domain profile. 110 175 IPR001005 -
Lal11g1202 519 PANTHER - 421 513 - -
Lal11g1202 519 PANTHER - 23 410 - -
Lal11g1202 519 MobiDBLite consensus disorder prediction 256 289 - -
Lal11g1202 519 CDD GT1 117 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1202 Lal-Chr11 15754457 15759940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1202 410 512 Trihelix Transcription Factor Family AT5G03680 38.596 1.04e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lal11g1202 Myb_DNA-bind_4 1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1202 - - gmx:100815903 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1202 11 15754457 15759940 Lal11g1202 11 15754457 15759940 ECH
Lal11g1202 11 15754457 15759940 Lal20g0138 20 906556 911866 LSH
Lal11g1202 11 15754457 15759940 Lal13g1412 13 13509304 13512904 PCT
Lal13g1412 13 13509304 13512904 Lal11g1202 11 15754457 15759940 PCT