Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1200 ATGGAGTTTTGGGGTGTTGAGGTAAAGAGTGGAGAATCACTGAAGGTTTATCCGGGAGATGACACGATTGTTCACCTTTCAATGGCTTGTCTGGGTGAGGTCAACAAGGATAAAGGGGGTGAACCTGTATTGCTGTATGTGAAGTTTGATGACCAGAAGCTTGTACTTGGAACACTTTCTTCTGACAAATTTCCTCAGATATCATACGATTTGATATTCGAGAAAGAATTTGAGCTATCCCATAATTGGAAACATGGGAGTGTTTTCTTTAACGGATATCGAGCTGAAGCTCAAGTCGGATCATATCCTATTTCCATAAATATATTCAAGTTAGCACTGCCAATGGTGAAGAACAGTGTTAAACCTGATGCAAATGAAGCTAAACAAAAGGAGAAGATAGCAGCCCCAATAAAGAAACAGAAGGCCAAAGAAAAGGAAGATTCATCTGATGAGTCTGACGAGGACTCTAGTGAAGACGAGCCAATGGCAAATGGTGAAATAGAAAGCAGTGAAGATGAAGATGATAGTAACGAGGAGGAGGATAATGAAGATGAATCTGATGATGAAGATAAATCTGATGATGAGGATGAATCTGACGAGGAGGAGACACCCAAGAAGGCTGAACCAAGCAATAAGAGGGCTCTTGATTCTTCTAAGAAAACACCTGTTCCAGAGAAGAAGGCGAAATTTATCACTCCTCAGAAAACTGGTGGCAAGAATGGTAGCGGCCATGTTGCAACTCCTCACCCATCTAAGCAGGCCGGTAAGGCAGCTGTAAGTAACAACCAGCCGCCGAAGCAGCACACTCCAAAGTCAGGTGGAGAATACAGCTGCAAGCCTTGCAACAGGTCATTTAAGACAGAGGATGCCTTAGGCTCTCATAATAAAGCCAAGCACAGTGTTAAGTGA 909 0.429 MEFWGVEVKSGESLKVYPGDDTIVHLSMACLGEVNKDKGGEPVLLYVKFDDQKLVLGTLSSDKFPQISYDLIFEKEFELSHNWKHGSVFFNGYRAEAQVGSYPISINIFKLALPMVKNSVKPDANEAKQKEKIAAPIKKQKAKEKEDSSDESDEDSSEDEPMANGEIESSEDEDDSNEEEDNEDESDDEDKSDDEDESDEEETPKKAEPSNKRALDSSKKTPVPEKKAKFITPQKTGGKNGSGHVATPHPSKQAGKAAVSNNQPPKQHTPKSGGEYSCKPCNRSFKTEDALGSHNKAKHSVK 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1200 302 MobiDBLite consensus disorder prediction 123 148 - -
Lal11g1200 302 MobiDBLite consensus disorder prediction 254 270 - -
Lal11g1200 302 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
Lal11g1200 302 Gene3D Classic Zinc Finger 260 302 - -
Lal11g1200 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 276 302 IPR013087 -
Lal11g1200 302 ProSitePatterns Zinc finger C2H2 type domain signature. 278 299 IPR013087 -
Lal11g1200 302 Pfam C2H2-type zinc finger 276 300 - -
Lal11g1200 302 Gene3D Nucleoplasmin core domain 1 100 - -
Lal11g1200 302 MobiDBLite consensus disorder prediction 203 226 - -
Lal11g1200 302 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 298 - -
Lal11g1200 302 MobiDBLite consensus disorder prediction 149 202 - -
Lal11g1200 302 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 298 - -
Lal11g1200 302 MobiDBLite consensus disorder prediction 121 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1200 Lal-Chr11 15735608 15740022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1200 1 94 C2H2 Transcription Factor Family AT3G44750 56.383 1.36e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal11g1200 NPL 5.4e-10 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1200 - - lang:109334297 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1200 11 15735608 15740022 Lal11g1200 11 15735608 15740022 ECH