Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1187 ATGGCGGTTCCTCCTCCGACGGTCGCCATTTCACCGGCGTCTCTATACGTCGGTGATCTCCACCCCGACGTCTCCGAGGGACAGATCTTCGAACTGTTCTCGGAATTCAAGAGTCTCGCTTCCGTTCGTGTTTGCCGTGATACTTCCACCGGAAAATCACTTTGTTATGGTTACGTTAACTTTGTTTCTCTGCAAGACGCGATTCGTGCGATTGAGCTGAAAAATCATGCTATACTGAACGGGAAAGCGATAAGAGTGATGTGGTCAGTTCGTGATCCAGGTGCGAGGAAGAACAACTCAGCGAACGTGTTTGTTAAGAACTTAGCTGAATCAATAGACAATGCGGGACTAGAAGACTTGTTTAAGAGATTTGGGAATATTTTGTCCAGCAAAGTTGTTATGTCTGAGGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAATCAGAGGAATCTGCAAATGCGGCCATTGAGAAGCTGAAAGGCTCTACTGTTGGTGATAAGCACATATATGTTGAGAGATTTGTCAAAAAGAGTGACTGCGTTTTGCCAGGATCTAATGCTCGGTATACAAATTTGTACATGAAGAACTTGGACCTTGACATCACAGAAGCAGTTCTGCAGGAAAAGTTTTCTTCTTTTGGGAAAATTGTTAGCTTAGCTATTGCAAAGGACAACAATGGGGTGTCAAAAGGTTTTGGCTTTGTGAACTATGATAATGCAGATGATGCTAAAAGGACAATTGAGGCGATGAATGGAACACAATTTGGTTCAAAGATTATATATGTAGCCAGGGCACAAAAGAAGTCCGAGCGTCAGCAGATCTTGACTAATCAGTTTGAGGAGAAACGTAAGGAAGAAATCATAAAGTATGAGGGGTCAAACATTTATGTAAAGAACATTGATGACAATATTAGTGATGAAGAACTGCGAAATCAATTTAGTTCATGTGGCACAATTACTTCTGCAAAAATTATGCGCAACAGCGAAGGGATAAGCAAAGGGTTTGGCTTTGTCTGTTTCTCCACTCCTGAGGAGGCTAACAAAGCTGTGAACAATTTTCATGGATTCATATTTCATGGTAAACCACTATATGTTGCTCTTGCTCAAAGGAAAGAGGATAGGCAGGCATACTTGCAGCTCCAGTATGCACAGAAAATAGCAGGACTAGCTGGACCTTCCACTGCCACTATCCCTGGTGGATATCCTCCTTTCTACTACGCAGCTTCTGGTGTTGCTTCACAGGTGCCTCTTGGAGCTGGGCTGATGTATCAATCTCGGTCATTGAGGCCAGGATGGAAAGCTAATGCCTTTGCATCTCCTGCTAGGTCATTCCAACAATCAATGGTTCCTGTTTCCCGTATTTCCAACAATACTAGGCAGCAAAGGCAAAGCAGGGGCAAGATAAATGGGCATACAATTTCAAAGGAAAATGCTCCCTGGCAATATGCCACAAACCCAGAAGACTTTTCGCTAACTGGACAGACTAAGTATGTAACCAGTGGGCACCACGGGGAGATGGCAAAAGGATCTGAATTCACATCTGGTGCTTCTAACTATGGTGGAGGTTCCCAGGGATCAGAAATGCTGCATAGCATGCTCTCTGCTGCTCCTCCTAATCAGCAGAAACAGATACTAGGTGAGCATCTCTACGAGCTTGTTAAGAAACTCGTAACGCGTGGCCTAGAAGCAAAGATTACAGGGATGCTTTTGGAGATGAACACTGCAGAATTGCTGCTTCTCCTGGAATCACCGGAGTCTCTTTCTGTAAAGGTGGAAGAAGCTATGAAGGTGCTTCACAACCCCAAGACCAAAGTTTCTGGACAGGATATAATACTCCATTCAAAGTACCTATCAGCTGAGGTTGCAGTAAATTGA 1881 0.4386 MAVPPPTVAISPASLYVGDLHPDVSEGQIFELFSEFKSLASVRVCRDTSTGKSLCYGYVNFVSLQDAIRAIELKNHAILNGKAIRVMWSVRDPGARKNNSANVFVKNLAESIDNAGLEDLFKRFGNILSSKVVMSEDGKSKGYGFVQFESEESANAAIEKLKGSTVGDKHIYVERFVKKSDCVLPGSNARYTNLYMKNLDLDITEAVLQEKFSSFGKIVSLAIAKDNNGVSKGFGFVNYDNADDAKRTIEAMNGTQFGSKIIYVARAQKKSERQQILTNQFEEKRKEEIIKYEGSNIYVKNIDDNISDEELRNQFSSCGTITSAKIMRNSEGISKGFGFVCFSTPEEANKAVNNFHGFIFHGKPLYVALAQRKEDRQAYLQLQYAQKIAGLAGPSTATIPGGYPPFYYAASGVASQVPLGAGLMYQSRSLRPGWKANAFASPARSFQQSMVPVSRISNNTRQQRQSRGKINGHTISKENAPWQYATNPEDFSLTGQTKYVTSGHHGEMAKGSEFTSGASNYGGGSQGSEMLHSMLSAAPPNQQKQILGEHLYELVKKLVTRGLEAKITGMLLEMNTAELLLLLESPESLSVKVEEAMKVLHNPKTKVSGQDIILHSKYLSAEVAVN 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1187 626 MobiDBLite consensus disorder prediction 455 479 - -
Lal11g1187 626 CDD RRM2_I_PABPs 101 173 IPR045305 -
Lal11g1187 626 SMART rrm1_1 296 368 IPR000504 GO:0003723
Lal11g1187 626 SMART rrm1_1 102 174 IPR000504 GO:0003723
Lal11g1187 626 SMART rrm1_1 14 87 IPR000504 GO:0003723
Lal11g1187 626 SMART rrm1_1 193 265 IPR000504 GO:0003723
Lal11g1187 626 Pfam Poly-adenylate binding protein, unique domain 535 600 IPR002004 GO:0003723
Lal11g1187 626 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 13 600 IPR006515 GO:0003723
Lal11g1187 626 Gene3D - 2 93 IPR012677 -
Lal11g1187 626 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 91 IPR000504 GO:0003723
Lal11g1187 626 PANTHER RNA BINDING PROTEIN 517 609 - -
Lal11g1187 626 PANTHER RNA BINDING PROTEIN 7 476 - -
Lal11g1187 626 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 269 IPR000504 GO:0003723
Lal11g1187 626 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 85 IPR000504 GO:0003723
Lal11g1187 626 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 262 IPR000504 GO:0003723
Lal11g1187 626 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 365 IPR000504 GO:0003723
Lal11g1187 626 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 171 IPR000504 GO:0003723
Lal11g1187 626 Gene3D - 94 175 IPR012677 -
Lal11g1187 626 Gene3D - 525 605 - -
Lal11g1187 626 CDD RRM4_I_PABPs 294 372 - -
Lal11g1187 626 CDD RRM1_I_PABPs 14 93 - -
Lal11g1187 626 SUPERFAMILY PABC (PABP) domain 531 610 IPR036053 GO:0003723
Lal11g1187 626 SUPERFAMILY RNA-binding domain, RBD 291 382 IPR035979 GO:0003676
Lal11g1187 626 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 527 605 IPR002004 GO:0003723
Lal11g1187 626 Gene3D - 184 280 IPR012677 -
Lal11g1187 626 Gene3D - 281 381 IPR012677 -
Lal11g1187 626 MobiDBLite consensus disorder prediction 502 526 - -
Lal11g1187 626 SMART poly_2 539 603 IPR002004 GO:0003723
Lal11g1187 626 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 178 IPR000504 GO:0003723
Lal11g1187 626 PANTHER POLYADENYLATE-BINDING PROTEIN 517 609 - -
Lal11g1187 626 PANTHER POLYADENYLATE-BINDING PROTEIN 7 476 - -
Lal11g1187 626 SUPERFAMILY RNA-binding domain, RBD 5 93 IPR035979 GO:0003676
Lal11g1187 626 SMART rrm2_1 14 87 IPR003954 GO:0003676
Lal11g1187 626 SMART rrm2_1 193 265 IPR003954 GO:0003676
Lal11g1187 626 SMART rrm2_1 102 174 IPR003954 GO:0003676
Lal11g1187 626 SMART rrm2_1 296 368 IPR003954 GO:0003676
Lal11g1187 626 SUPERFAMILY RNA-binding domain, RBD 99 273 IPR035979 GO:0003676
Lal11g1187 626 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 372 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1187 Lal-Chr11 15640663 15645503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1187 13 624 Eukaryotic Initiation Factors Gene Family AT2G36660 49.837 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1187 K13126 - gmx:100804671 875.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1187 11 15640663 15645503 Lal11g1187 11 15640663 15645503 ECH