Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1183 ATGGGGTTCAAAAGAACCCTATTTTGGCTTTCTAGCTTTCTCATTTTTCTCTTTTCTATTATCATCTTTCATTATACCACTCCTCCTTTCACACCCATTACGCATGAAGAAAATTTCAATTTTCATGTAGCTAATATATTTCATAAGATTATAAGGCTTAGTGGTGCTCAAGATATTGTGTCCATAGTAACAAGTATTGTGAGAATGAGACATAATTTGAAGGTAACAAATAAGGGAAAATGTGACAATGCTAAATGGGCTTCCACACTTATTCCAAACTATAATGTAACTCTTGTGCTCATGGTTGATCAATATGGTTGTGGCAACTATAGTAGTGTGCAAGAAGCAGTTAATGTTGTTCCTCAATATAGTTCTAATACCACCTTGATCATAATCGATTACGGTATATACAGGGAGAAGGTAGTGGTACAAGGCAACAAAACAAACTTGATAATTCAAGGTCAAGGGTACCTTAACACAATCATAGAATGGAATGACACAGCAAATTCCACAGGAGGAACAGCTTATAGCTACTCATTTGGTGTCTATTCTTCTAAGTTCACTGCTTACAACATTAGCTTCAAGAACACGGCTCCTCCGCCATCGACGGGAGCGGTGGGGGCACAGGCAGTGGCTTTAGCAGTCAATGGTGATCAATCAGCATTTTATGGGTGTGGATTTTATGGTGCCCAAGACACACTCAATGATGAGAGTGGGAGACATTATTTTAAAGAATGTTTCATCGAAGGATCTATTGATTTCATATTTGGAAATGCTAAATCACTTTATGAGGATTGTGTGATAAAGTCTATAGCAAAAGAAGAGGGAGAAGGGAGAGTAAGTGGGTCAATAACAGCACAAAGAAGGAGAACAATGGAGGAAGAAAGTGGGTTTTCATTTGTGAATTGTAACATTATTGGAACTGGGAAAGTGTGGCTTGGAAGAGCTTGGGGAAATTATGCTACTGTCGTTTTCTCAACAACTTATATGTCTGACGTTATTTCTTCTGATGGATGGAATGATTGGAACGATCCCTCTAGAGATCAGAGTGTGTACTTTGGGGAGTATAGTTGTTTGGGACCTGGAGCAAATTATACATCTAGAGCCTCTTTTGCAAAGCAACTCAAGAATTATGAAGCAATTCCCTACATGAATATTTCGTATATTGATGGAACTGATTGGCTTTTTAATTATTCTCAAAATTAA 1206 0.3765 MGFKRTLFWLSSFLIFLFSIIIFHYTTPPFTPITHEENFNFHVANIFHKIIRLSGAQDIVSIVTSIVRMRHNLKVTNKGKCDNAKWASTLIPNYNVTLVLMVDQYGCGNYSSVQEAVNVVPQYSSNTTLIIIDYGIYREKVVVQGNKTNLIIQGQGYLNTIIEWNDTANSTGGTAYSYSFGVYSSKFTAYNISFKNTAPPPSTGAVGAQAVALAVNGDQSAFYGCGFYGAQDTLNDESGRHYFKECFIEGSIDFIFGNAKSLYEDCVIKSIAKEEGEGRVSGSITAQRRRTMEEESGFSFVNCNIIGTGKVWLGRAWGNYATVVFSTTYMSDVISSDGWNDWNDPSRDQSVYFGEYSCLGPGANYTSRASFAKQLKNYEAIPYMNISYIDGTDWLFNYSQN 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1183 401 PANTHER PECTINESTERASE 14-RELATED 10 399 - -
Lal11g1183 401 ProSitePatterns Pectinesterase signature 2. 248 257 IPR033131 -
Lal11g1183 401 Gene3D - 94 400 IPR012334 -
Lal11g1183 401 SUPERFAMILY Pectin lyase-like 98 395 IPR011050 -
Lal11g1183 401 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 10 399 - -
Lal11g1183 401 Pfam Pectinesterase 101 391 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1183 Lal-Chr11 15614156 15618006 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1183 95 395 Carbohydrate Esterase AT1G05310 53.795 6.72e-115 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1183 - - gmx:100802034 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1183 11 15614156 15618006 Lal11g1183 11 15614156 15618006 ECH
Lal11g1183 11 15614156 15618006 Lal24g0434 24 3083737 3086624 PCT
Lal24g0434 24 3083737 3086624 Lal11g1183 11 15614156 15618006 PCT