Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1181 ATGATTTCAACATCATTGCTCTTTTTTGTTGCATTTCAGATTCCTCATGTCCATGCAGGCAAGGCCAAATCTTCTGCATGGAAGCAAGCTCATGCAACTTTCTATGAAGGAAGTGCTAATACATTTGGAGGAGCTTGTGGATATGAGGATGTTAATAAACATGGGTATGGTACGGACACAGCAGCATTGAGCAAAGCATTGTTCAAAGAAGGTGCAGCATGTGGTGCATGTTTTGAAATCAAATGTAACCAACAAAAGTGGTGCAAAGGTAGAAATTCTTTAATTATCACAGCAACAGATCACTGCCCTCCGAATCCTCAACAAGATAGTAACAATGGAGGATGGTGCAATCCACCAAGAGAACATTTTGATTTAGCCAAACCTGCATATCTCAAAATTGCTGAGTACAAGGCTGGCATTGTACCTGTCTATTACCGCAGGGTATCATGCAAGAGGCAAGGAGGTATTAAATTCACAATAACTGGAAATCCTTACTTCTATCTAGTGACTGTGTCTAATGTTGGAGGGTCTGGACAAGTAGTAGGAGTCCGAGTGAAGGGTAACAAGACCCCATGGGCAACTTTGAGAAGAAATTGGGGTCAGAAATGGGAAACTAATGTCAAGTTACAAGGACAAGTATTGAGCTTTAGTGTGCAAACAAGTGATGGAAGTTCAACAACCTCATCAAATGTTTTCCCCAGCCATTGGCAATTTGGTCAAACCTATGAAGGCAGAAACTTTTCATAA 747 0.4096 MISTSLLFFVAFQIPHVHAGKAKSSAWKQAHATFYEGSANTFGGACGYEDVNKHGYGTDTAALSKALFKEGAACGACFEIKCNQQKWCKGRNSLIITATDHCPPNPQQDSNNGGWCNPPREHFDLAKPAYLKIAEYKAGIVPVYYRRVSCKRQGGIKFTITGNPYFYLVTVSNVGGSGQVVGVRVKGNKTPWATLRRNWGQKWETNVKLQGQVLSFSVQTSDGSSTTSSNVFPSHWQFGQTYEGRNFS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1181 248 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Lal11g1181 248 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Lal11g1181 248 PRINTS Expansin signature 113 130 IPR002963 GO:0009664
Lal11g1181 248 PRINTS Expansin signature 130 143 IPR002963 GO:0009664
Lal11g1181 248 PRINTS Expansin signature 154 166 IPR002963 GO:0009664
Lal11g1181 248 PRINTS Expansin signature 166 187 IPR002963 GO:0009664
Lal11g1181 248 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
Lal11g1181 248 PRINTS Expansin signature 230 246 IPR002963 GO:0009664
Lal11g1181 248 Gene3D - 154 247 IPR036749 -
Lal11g1181 248 SUPERFAMILY Barwin-like endoglucanases 26 173 IPR036908 -
Lal11g1181 248 SMART dpbb_1 60 145 IPR007112 -
Lal11g1181 248 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Lal11g1181 248 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Lal11g1181 248 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576
Lal11g1181 248 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Lal11g1181 248 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Lal11g1181 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 244 IPR007117 -
Lal11g1181 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 155 IPR007112 -
Lal11g1181 248 Pfam Lytic transglycolase 60 145 IPR009009 -
Lal11g1181 248 SUPERFAMILY PHL pollen allergen 152 244 IPR036749 -
Lal11g1181 248 PANTHER EXPANSIN-A15 15 247 IPR002963 GO:0009664
Lal11g1181 248 PANTHER EXPANSIN-A32 15 247 - -
Lal11g1181 248 Pfam Expansin C-terminal domain 156 233 IPR007117 -
Lal11g1181 248 Gene3D - 13 151 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1181 Lal-Chr11 15566622 15568663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1181 1 247 Expansin Gene Family AT2G39700 57.143 5.93e-102 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1181 - - gmx:100800424 328.176