Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1177 ATGCCGATCAGAAACATAGCCATAGGAAGACCAGAAGAAGCAACACACCCAGACACATTAAAAGCAGGACTTGCAGAGTTTATATCAACATTCATTTTTGTGTTTGCAGGTTCAGGTTCTAGCATTGCTTATAATAAGCTTACTAATGATGGTCCAGCTACACCTGCTGGACTAATTTCAGCTTCTATTGCTCATGCTTTTGCTCTTTTTGTTGCTGTTTCTGTTGGTGCTAATATTTCTGGTGGTCATGTTAACCCTGCTGTTACCTTTGGTGCTTTTGTTGGTGGTAACATCACACTTCTTCGTGGTATTGTCTATATTATTGCTCAGCTTCTTGGCTCCATCGTTGCCTCCTTGCTCCTTACTTTCGTCACTGGACTTGGTGTTCCAGCATTCGCTCTTTCGGAAGGAGTAGGTATTGGAAACGCAGTTGTTCTTGAAATAGTGTTGACTTTTGGTTTAGTGTACACAGTTTACGCTACAGCCGTTGACCCAAAGAAGGGTAGTTTGGGAACTATTGCACCAATAGCCATTGGTTTCATTGTTGGTGCTAACATTTTGGTTGGTGGTGCATTCAGTGGAGCATCAATGAATCCAGCAGTTACATTTGGGCCTGCTGTTGTGAGCTGGACCTGGACCAACCACTGGATCTATTGGGTTGGGCCTCTTGTTGGTGGTGGGCTTGCTGGGCTTATCTATGAAGTTCTCTTTATCAACCATAGCCATGAACAACTACCAACTACTGATTACTAG 753 0.4343 MPIRNIAIGRPEEATHPDTLKAGLAEFISTFIFVFAGSGSSIAYNKLTNDGPATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASLLLTFVTGLGVPAFALSEGVGIGNAVVLEIVLTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILVGGAFSGASMNPAVTFGPAVVSWTWTNHWIYWVGPLVGGGLAGLIYEVLFINHSHEQLPTTDY 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1177 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal11g1177 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal11g1177 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal11g1177 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal11g1177 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal11g1177 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal11g1177 250 PANTHER AQUAPORIN TIP1-1 1 250 - -
Lal11g1177 250 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal11g1177 250 TIGRFAM MIP: MIP family channel proteins 25 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal11g1177 250 PANTHER AQUAPORIN-8 1 250 IPR034294 -
Lal11g1177 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal11g1177 250 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
Lal11g1177 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Lal11g1177 250 SUPERFAMILY Aquaporin-like 12 246 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1177 Lal-Chr11 15526412 15528132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1177 1 250 Major Intrinsic Protein MIP AT2G36830 81.673 1.30e-145 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1177 K09873 - gmx:547967 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1177 11 15526412 15528132 Lal11g1177 11 15526412 15528132 ECH
Lal11g1177 11 15526412 15528132 Lal1g1798 1 20307448 20309673 LSH
Lal11g1177 11 15526412 15528132 Lal20g0115 20 755328 757263 LSH