Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1175 ATGCTCCAAAAAACCTGCATTATTTTACTTATATTCTCTTGTTTTGGTTACTTTTTACCACTTGGAACATCAATGCTGAACTTAACTCTTCCAGGAACACACCCTGATCCTGAAGCTGTTGCACATGAAGTTCATAGGAAGATTAATGCTTCAATGACAAGAAGAGAAATGCTAGCATTATCAGAATCATCATTATCATCGTCATCATCATCATCGTGCCTAACAGGTAACCCAATTGATGATTGTTGGAAATGTGATCCAGATTGGCCGAACAACCGTCAAAGGCTAGCAGATTGTGGAATTGGGTTTGGACAATATGCAAAAGGAGGAAAGGGTGGTGAGTTTTACATTGTTACTGATTCATCTGATAATGATGCTGTTAACCCAAAACCAGGAACACTTAGATATGCAGTGATACAGAATGAACCACTTTGGATAGTGTTCCCAAGTAACATGATGATTGAACTTTCTCAAGAGTTGATTTTTAATAGCTATAAGACCCTTGATGGGCGTGGTGCTGATGTTCACATTGTGGGTGGAGGTTGCATTACTCTTCAGTATATTAGCAATGTCATTATACATAATATTCATATCCACCATTGTCATCCCTCTGGGAACACAAATGTGCGGTCAAGCCCAGAGCACTATGGGTATCGCACAGAATCAGATGGTGATGGTATATCAATATTTGGATCAAAGGATTTATGGATTGACCATTGTACCCTTTCACGATGCAAAGATGGGTTAATAGATGCAGTAATGGGGTCCACTGGGATCACTATATCAAACAACTTCTTCTCTCACCACAATGAAGTCATGCTACTTGGCCATAGTGACCATTACACTCCTGACTCTGGCATGCAAGTCACCATTGCCTTCAATCACTTTGGGGAGCAGCTTGTGCAGCGCATGCCAAGGTGCAGGAGGGGTTACATCCACGTAGTTAACAATGATTTCACCCGGTGGGAGATGTATGCTATTGGTGGCAGTGGAGAACCCACCATCAACAGCCAAGGGAACCGTTACATGGCTCCAACTAACCCTTTTGCTAAGGAAGTTACTAAGAGGGTTGACACTGAAGAAGGAATGTGGAAGGGATGGAATTGGAGGTCTGAGGGTGATATCATGGTTAATGGAGCCTTCTTTGTAGCTTCTGGGGAAGAAGTCGAGGTTAAGTATGAGAAGGCTTATAGCATCGAGCCTAAATCGGCCGATCGAATAAGTATACTCACCATGTCTGCTGGTGTTCTTGGCGTTGCCAGGGACAACAACCTTGGAATGTGGAGCAGAGGACCCAATGGTGAAGGTAATGACATTACAGATTCAGGAGGACTTGAATACTCAGATGAAATGTCCCTTAGTGCAAGGGTGGTTATGCCACCTTTGCTTACTTTCACTATTATTGTTTCATCTTTTCTTTTGTTGTGTTTCGTGTCTTGTAGAATACCATTAGTTGTTATTCTATAA 1467 0.4206 MLQKTCIILLIFSCFGYFLPLGTSMLNLTLPGTHPDPEAVAHEVHRKINASMTRREMLALSESSLSSSSSSSCLTGNPIDDCWKCDPDWPNNRQRLADCGIGFGQYAKGGKGGEFYIVTDSSDNDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIELSQELIFNSYKTLDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSSPEHYGYRTESDGDGISIFGSKDLWIDHCTLSRCKDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDHYTPDSGMQVTIAFNHFGEQLVQRMPRCRRGYIHVVNNDFTRWEMYAIGGSGEPTINSQGNRYMAPTNPFAKEVTKRVDTEEGMWKGWNWRSEGDIMVNGAFFVASGEEVEVKYEKAYSIEPKSADRISILTMSAGVLGVARDNNLGMWSRGPNGEGNDITDSGGLEYSDEMSLSARVVMPPLLTFTIIVSSFLLLCFVSCRIPLVVIL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1175 488 PRINTS Pollen allergen Amb family signature 99 116 IPR018082 -
Lal11g1175 488 PRINTS Pollen allergen Amb family signature 123 148 IPR018082 -
Lal11g1175 488 PRINTS Pollen allergen Amb family signature 159 175 IPR018082 -
Lal11g1175 488 PRINTS Pollen allergen Amb family signature 223 244 IPR018082 -
Lal11g1175 488 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Lal11g1175 488 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Lal11g1175 488 PRINTS Pollen allergen Amb family signature 367 391 IPR018082 -
Lal11g1175 488 PRINTS Pollen allergen Amb family signature 396 419 IPR018082 -
Lal11g1175 488 PANTHER PECTATE LYASE 1 441 - -
Lal11g1175 488 PANTHER PECTATE LYASE 18-RELATED 1 441 IPR045032 GO:0030570
Lal11g1175 488 SMART amb_all 151 348 IPR002022 -
Lal11g1175 488 Pfam Pectate lyase 161 334 IPR002022 -
Lal11g1175 488 SUPERFAMILY Pectin lyase-like 65 405 IPR011050 -
Lal11g1175 488 Gene3D - 76 418 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1175 Lal-Chr11 15498820 15505309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1175 1 474 Polysaccharide Lyase AT3G53190 74.790 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1175 K01728 - gmx:100775595 796.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1175 11 15498820 15505309 Lal11g1175 11 15498820 15505309 ECH