Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1173 ATGGCGAATCCATTTGAATTTCAATTATACGAATACAACGAGAACGTACTTGAAAGTTTAGGTCCATCAGCGCTTGTAATCTCCGACGATGATGAAGAAGAAAACGAAGAAGAAGATGATGAGGACGATGAAGATTACGTCGCCGTTTTACCATCTTCTAGGGTTTCGGATAATTGCGATGAAGAAGAGCGGAACAAGCGGCGCAGAACGGAAGTAGGAGAAGCTTCGTCTTCATCAAACGCAATTGACAGTAGCCAAGGGAATGAGTGGAGTCACAGCGATATTGATGGACTACTTTGTCCTATTTGCATGGAACCCTGGGTCAACAATGGCGAACACCATATCTGTTGTCTTCCTTGTGGACACATATATGGTATGTCTTGCATCAAAAAATGGCTTCAACAGCGAAAAAAGCACGGCAAGTGTCCTCAATGCAATAAGAAATGTTCCTTGAAGGATGTGAGGAAACTCTATGCTTCACGATTAGTTGCTGTTGATGAAGAATCTCAAAAGAGGATTCACTCACTTGAGGCCAAATGTGCAGCCCTTGAAAGTAAGGGTGATGTTTGGCGCAAGAAAGAAGCTGGATGGCAGAAGAGAGAAGCTGCATTACATATTCAAGTTCAGAAGCTTGCAGAGAAAAACATTTATTTGGAGCAGCTGCTAGTAGATATGCAGAGCAGGCAATCTGGAATTGGGAACTATAGCTCAAGCTTCTATGGAAAGGGATCCTTTTGCAATTTCGATCTGCAGAAAACATTTCAGCTGAGTGGTGCACGCGTATTTGACATGGACACTTCAAAGCAAATTATATTAGTTTCACAAAAGCCAAGGGTGATAGGTGGAATGCAATCACTAACTAAATTGAGCTTGATAGCTCCATTTGAGATGGAAGATATCTTACTACCTTCCACTACAAATGGTATTAGAGATCTACATATTTCACCTTCTAATGGTAGCCTGGCCCTCTATGCTTCAGTAGGAAAGAATTTATCAGTGCTAAGCTTGGAGAGCAACAATCCTGTTGTAAATTATGATCTGCAGTGCCCGGCTTGGTCATGTTCATGGGATCTCAACAGTTCACATTACTTATATGCTGGACTACAGAATGGTTGTGTCTCTGTGTTTGATATGCGCCAAACTGCAGGACCTGTAAAATCTTTATTTGGGTTGACTAGCAACCCTGTTCATACTTTACAATCACTTGCACAAAATTCAAGTCTTTCATCTGGTGGTAGGACCATCCTATCTGCAGCTGCCTTTGGAGTTTCTCAGTGGAACTTTGATTCTGAAGAAGGGCCGTCTCTTCTTCGTAATACTGACAGTCAAGGAGTTTGTATATCCCTTGCCTGTTGCCCTAGCAGTGACGACATTGTTGTTTCGTACCGTCCGAAAGTTGACATGTCTATGGAAGTGCCTCTTTCTCAACAAGTGCTCAGTCCTCTAGGTACTGGACAAGGAGTACAGGGCTCTCATGTCTTGTTCAAGAGAGATGATAGTCACCATTTCCAAATGATGGGTTCCTCATGCGCCAATGTAAGTAAAATTCGACTACCAAAATGTGTGATTATAGAGTTAGAGGATCAGAGAAGATTGTTTGCTTGTGGAGATGAAGTTACTGGTGAACTGGTATTGCATGAGTTGCCATCTTTCAGAGTGCTTCAGCAATTCAAATTACCTGCTCATGCCCGTGATATCAAGTACTCACCTAGCCATGGAATACTTGGTTGTTTAAGTGAGAACACATTGCAGCTTTTCCATGCCAATCTTCCGTGA 1776 0.4234 MANPFEFQLYEYNENVLESLGPSALVISDDDEEENEEEDDEDDEDYVAVLPSSRVSDNCDEEERNKRRRTEVGEASSSSNAIDSSQGNEWSHSDIDGLLCPICMEPWVNNGEHHICCLPCGHIYGMSCIKKWLQQRKKHGKCPQCNKKCSLKDVRKLYASRLVAVDEESQKRIHSLEAKCAALESKGDVWRKKEAGWQKREAALHIQVQKLAEKNIYLEQLLVDMQSRQSGIGNYSSSFYGKGSFCNFDLQKTFQLSGARVFDMDTSKQIILVSQKPRVIGGMQSLTKLSLIAPFEMEDILLPSTTNGIRDLHISPSNGSLALYASVGKNLSVLSLESNNPVVNYDLQCPAWSCSWDLNSSHYLYAGLQNGCVSVFDMRQTAGPVKSLFGLTSNPVHTLQSLAQNSSLSSGGRTILSAAAFGVSQWNFDSEEGPSLLRNTDSQGVCISLACCPSSDDIVVSYRPKVDMSMEVPLSQQVLSPLGTGQGVQGSHVLFKRDDSHHFQMMGSSCANVSKIRLPKCVIIELEDQRRLFACGDEVTGELVLHELPSFRVLQQFKLPAHARDIKYSPSHGILGCLSENTLQLFHANLP 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1173 591 MobiDBLite consensus disorder prediction 74 89 - -
Lal11g1173 591 Pfam Ring finger domain 100 146 IPR001841 -
Lal11g1173 591 Coils Coil 166 186 - -
Lal11g1173 591 MobiDBLite consensus disorder prediction 21 89 - -
Lal11g1173 591 CDD mRING-C3HGC3_RFWD3 96 146 - -
Lal11g1173 591 Gene3D - 237 471 IPR015943 GO:0005515
Lal11g1173 591 SMART ring_2 100 145 IPR001841 -
Lal11g1173 591 ProSiteProfiles Zinc finger RING-type profile. 100 146 IPR001841 -
Lal11g1173 591 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 29 586 - -
Lal11g1173 591 SUPERFAMILY RING/U-box 91 152 - -
Lal11g1173 591 MobiDBLite consensus disorder prediction 56 73 - -
Lal11g1173 591 MobiDBLite consensus disorder prediction 27 46 - -
Lal11g1173 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 226 IPR013083 -
Lal11g1173 591 PANTHER RFWD3 PROTEIN 29 586 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Lal11g1173 591 SUPERFAMILY WD40 repeat-like 303 586 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1173 100 150 C3H Transcription Factor Family AT2G03000 43.137 3.68e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1173 K15691 - gmx:100818898 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1173 11 15461351 15469987 Lal11g1173 11 15461351 15469987 ECH