Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1158 ATGGCATCTCTATTAGCGGTTGGTGTCACTTTGTTTCTAAATTCGGTTGTTACAACAACAACAACACTTCACTTTCCTCTCCTTCAAAACAAATACATACTTCTTGTCTCTCTGAATTTCCATTGTTCCTTTCAAACTTGTCTTGTCTTTTCTCTTTTCTGGGCTACTATACCTTCATATATGGCAACTGAAGCTGAACCTACAAGTACCCCAATTCACAAGGATGTAGAGTCAACTGAAATAACTGAAGAACAACCTAGTAGACAACAACAACAACATGGGAGAAGGAAAAACCTTATCTTGGAGATACCCACAAAAAATTTGGATGAAGCAAAAGAGAATATTTTCAGGATAAACACTCCTCCAAAGGGAGAGATTTTCTCCCCTTTATCCACAAGCAATGACTTTCCAGGTCCTTCAATAAAAAATAAATCAACTGTTAAAACAGCCCTTATTCCAAAACTTGGTTTAAAATTTCACATGAGTTCAGATATTGAAAAGGCTTCATCACTAGCACTTGAAGAAGGTTCACCGCCACGAAAAAATCCTACAATTTCAAGGACATTATCTCTTACAAAGTTTATCAGCACCACTAGTGGGAATAAAATGTCTTCCTTACCAATAACTTCAATTGCTCAGTCAAATTCAGAATCTACACATGAAGGGAACATAGCCTATTCAGCAACATCTGTTAAAAAAGGACAGGAATTACCGATTCATCGCTCCCGTTCAGTTCCTGTGCTTACTAAACTTGGGAACACATCTGTAGGTAGCATGTTTCGTGTAGTTCCAACCACACCGCGGTTCACCGGGAGTATTGCCACAACATCTATGAAATCTCCACCTGATGATACTGTTGAAAATGAGGATGGGGAAGATATTCCCGAAGAAGAAGCTGTATGCAGAATTTGTTTGATTGAATTAGGAGAAGGTGGTGATACACTTAAAATGGAATGCAGCTGCAAAGGTGAACTTGCACTGGCACACCAAGAATGTGCAGTTAAATGGTTTAATGTTAAAGGCAATAGAATATGTGATGTGTGCAAAAAAGAAGTTCAGAACCTACCTGTAACACTTCTAAGAGTTCCAAGTGCCCAAGGACTTAACCTTTTAGGGACCAGACACCAATACAGACAAGGGTAA 1143 0.3876 MASLLAVGVTLFLNSVVTTTTTLHFPLLQNKYILLVSLNFHCSFQTCLVFSLFWATIPSYMATEAEPTSTPIHKDVESTEITEEQPSRQQQQHGRRKNLILEIPTKNLDEAKENIFRINTPPKGEIFSPLSTSNDFPGPSIKNKSTVKTALIPKLGLKFHMSSDIEKASSLALEEGSPPRKNPTISRTLSLTKFISTTSGNKMSSLPITSIAQSNSESTHEGNIAYSATSVKKGQELPIHRSRSVPVLTKLGNTSVGSMFRVVPTTPRFTGSIATTSMKSPPDDTVENEDGEDIPEEEAVCRICLIELGEGGDTLKMECSCKGELALAHQECAVKWFNVKGNRICDVCKKEVQNLPVTLLRVPSAQGLNLLGTRHQYRQG 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1158 380 Pfam RING-variant domain 301 348 IPR011016 GO:0008270
Lal11g1158 380 MobiDBLite consensus disorder prediction 76 97 - -
Lal11g1158 380 MobiDBLite consensus disorder prediction 271 292 - -
Lal11g1158 380 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 69 366 - -
Lal11g1158 380 SMART ringv_2 300 349 IPR011016 GO:0008270
Lal11g1158 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 356 IPR013083 -
Lal11g1158 380 ProSiteProfiles Zinc finger RING-CH-type profile. 293 355 IPR011016 GO:0008270
Lal11g1158 380 PANTHER OS02G0165000 PROTEIN 69 366 - -
Lal11g1158 380 SUPERFAMILY RING/U-box 297 352 - -
Lal11g1158 380 CDD RING_CH-C4HC3_MARCH 301 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1158 Lal-Chr11 15250429 15255819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1158 286 355 C3H Transcription Factor Family AT2G37950 36.620 3.18e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1158 - - gmx:100789854 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1158 11 15250429 15255819 Lal11g1158 11 15250429 15255819 ECH