Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1154 ATGCTTAACCTTGTTGGTTTCTCGTTACCAATGGAGGGAATGCTCTACGCAATCTTCATACTCAATTTCGTTTTGGTTTGCCAATTCATTCTCCTTCAACCTCTTGTTTCTGCTTCAGGTGGAAAACCTGGAAGTTCTGCGGAGTTGTTCGAGAGGGTATCTGAAAGTATAAAAGTGAAACGTTACACCGAGGCCCTTGATGATCTAAATGCTGCAATAGAAGCAGATCCAAACCTTTCAGAAGCATACCTTTTCCGTGCGTCAGTTCTTCGTCAGTTATGCAGATATGAACAATCTGAGAGGAGCTACAAAAAGGTTTTGGAGTTAAAACCTGGACATTCGACAGCAGAAAAGGAGCTCTCTCAGCTGTTGCAGGCAAAAAGTGCCCTAGAAACAGCTCAGTCCCTATATGATTTGGCCAACTTCACAAAATCATTGGAATATATTGATAAAGTTGTTCTTGTTTTTTCTCCGGCTTGTACTAAGGCCAAGCTTCTTAAAGTGAGTTTGTTGATAGGTGATAAAGACTATGAGGGTGCCATTGCTGAGGCTGGGTTTATTCTCAAGGAAGATGAAAATAATTTAGAGGCATTGTTGTTACGAGGTCGTGCATATTACTATTTAGCTGATCATGATGTTGCCACAAGGCATTTCCAGAAAGGTCTCCGTCTGGATCCAGAGCACGGTGAACTGAAAAAGGCATACTTTGGATTGAAAAGTCTACTCAAGAAGAGTAAAAGTGCTGAAGATAATGCGAGTAAGGGTAAATTACGCGTGGCAGTGGAGGAATTCAAAACCGCACTTGCAGTGGACCCTGACCATCTTGCACATAATGTACACCTTCACCTTGGCTTATGTAAAGTGTTAGTTAGGCTTGGCAGAGGAAAAGACGCTTTGAACAGTTGTAGTGAAGCTCTTAAGATTGACGAGGAGCTTACTGAAGCTCTTGTTCAGAGGGGAGAAGCTAAACTCTTAACGGAGGATTGGGAGGGAGCCGTGGAGGATATAAAATCGGCTGCTCAAAAATCTCCTCAGGATAGGAATATCCGTGAAGCTTTAATGAGGGCAGAGAAAGCTTTAAAGATGAGCAAACGCAAGGACTACTACAAGATTTTAGGAATTTCAAAAACTGCTTCGGCCGCTGAGATCAAACGTGCCTATAAGAAACTTGCCTTGCAATGGCATCCAGATAAGAATGTGGACAATAGGGAAGAGGCTGAGGCTAAATTCCGAGAAATTGCTGCTGCATATGAGATTCTTAGTGACGAAGACAAACGCGTGAGGTTTGACCGAGGGGAGGACCTTGAAGACACGGGAGGAATGGGTAGTGGTGGTGGAGGTTTCAACCCTTTTGGTGGTGGAGGGCAGCAATATACTTTCACTTTTGACGGTGGCTTCCCGGGTGGCGGCTTTGGTGGAGGCTCTCCGGGTGGGTACGAGTTTCATTTTTGA 1452 0.4415 MLNLVGFSLPMEGMLYAIFILNFVLVCQFILLQPLVSASGGKPGSSAELFERVSESIKVKRYTEALDDLNAAIEADPNLSEAYLFRASVLRQLCRYEQSERSYKKVLELKPGHSTAEKELSQLLQAKSALETAQSLYDLANFTKSLEYIDKVVLVFSPACTKAKLLKVSLLIGDKDYEGAIAEAGFILKEDENNLEALLLRGRAYYYLADHDVATRHFQKGLRLDPEHGELKKAYFGLKSLLKKSKSAEDNASKGKLRVAVEEFKTALAVDPDHLAHNVHLHLGLCKVLVRLGRGKDALNSCSEALKIDEELTEALVQRGEAKLLTEDWEGAVEDIKSAAQKSPQDRNIREALMRAEKALKMSKRKDYYKILGISKTASAAEIKRAYKKLALQWHPDKNVDNREEAEAKFREIAAAYEILSDEDKRVRFDRGEDLEDTGGMGSGGGGFNPFGGGGQQYTFTFDGGFPGGGFGGGSPGGYEFHF 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1154 483 ProSiteProfiles dnaJ domain profile. 367 433 IPR001623 -
Lal11g1154 483 Coils Coil 403 423 - -
Lal11g1154 483 ProSitePatterns Nt-dnaJ domain signature. 410 429 IPR018253 -
Lal11g1154 483 Gene3D Tetratricopeptide repeat domain 41 364 IPR011990 GO:0005515
Lal11g1154 483 Gene3D DnaJ domain 365 474 IPR036869 -
Lal11g1154 483 SMART dnaj_3 366 425 IPR001623 -
Lal11g1154 483 Pfam Tetratricopeptide repeat 59 113 - -
Lal11g1154 483 ProSiteProfiles TPR repeat profile. 80 113 IPR019734 GO:0005515
Lal11g1154 483 PRINTS DnaJ domain signature 369 387 IPR001623 -
Lal11g1154 483 PRINTS DnaJ domain signature 387 402 IPR001623 -
Lal11g1154 483 PRINTS DnaJ domain signature 405 425 IPR001623 -
Lal11g1154 483 PRINTS DnaJ domain signature 425 444 IPR001623 -
Lal11g1154 483 Pfam Tetratricopeptide repeat 196 228 IPR013105 -
Lal11g1154 483 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 11 483 IPR044620 -
Lal11g1154 483 Pfam DnaJ domain 367 430 IPR001623 -
Lal11g1154 483 SUPERFAMILY Chaperone J-domain 360 470 IPR036869 -
Lal11g1154 483 SMART tpr_5 313 346 IPR019734 GO:0005515
Lal11g1154 483 SMART tpr_5 279 312 IPR019734 GO:0005515
Lal11g1154 483 SMART tpr_5 46 79 IPR019734 GO:0005515
Lal11g1154 483 SMART tpr_5 80 113 IPR019734 GO:0005515
Lal11g1154 483 SMART tpr_5 195 228 IPR019734 GO:0005515
Lal11g1154 483 ProSiteProfiles TPR repeat profile. 195 228 IPR019734 GO:0005515
Lal11g1154 483 Coils Coil 113 133 - -
Lal11g1154 483 CDD DnaJ 367 422 IPR001623 -
Lal11g1154 483 SUPERFAMILY TPR-like 57 362 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1154 Lal-Chr11 15234446 15241911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1154 363 430 C2H2 Transcription Factor Family AT1G74250 44.444 9.60e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1154 K09523 - gmx:100804685 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1154 11 15234446 15241911 Lal11g1154 11 15234446 15241911 ECH
Lal11g1154 11 15234446 15241911 Lal1g1820 1 20557068 20563689 LSH
Lal11g1154 11 15234446 15241911 Lal20g0088 20 558678 562653 LSH