Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1153 ATGTTGGCCAACCTCAGTCCTATATGCCCTGTGACTTGTACATGCTCAAGTCAAATTCTTCCCGTTCTCTTACTTTGGAATCTGACATTTATTGTAACTGCTAAGAAGGTGGTTCGATTTAGCGGGGACTGGTATAATGAGTTAAGCAGCACAGTTTTCACAGAGTATTCACTAGATACGACTCAGAGCCTCAGACTAGAAGGTGCTCTTTCTGTATCAGTGAAGGGGTGCGCGAGTAAAATAGCTTCAAATTGTGAGTTATTTGCAGATTTGACTTGGCTACACTGCCTGTTGAATCCTGAGATTACAAGCGATAGAATGGGGCATAGACACTTTTATAACACAACTCCAACATTTGAGGGTGAGCCTGACCAGAATTGGAATCATATGCATGCAGATCAGCATCATGTGCATCTTGGTATGCCTAACACTTCAGAAAATGGTTCGTTTATTTATCCTGTGGAAAGTATGTCTTCAGATAGTGCTTCTTTCCCCTCTCATTGGAACTCTACCACAAGCTCAAATGGATACGCGTTATCAACTCTCAACATTGAAGTACCTCCTCATCAATCGGATGCTTCGGGCACTTCTAATAATCATTTTATGCATTCATCTAGTGCTGGAGCTTTCTTTGCAGTGTCTGAAAATTATGAACATCAGCCTTCTTCTGGTTATGACGGGCAAGCATTTCATTGTAATGGTGGTTTTATTGATCTTACAATAGGAAGTGGAAGAGGGACTCACAAGCGTAAGAGCCCTGGAATTTCTCCAGTTTATGAGAGAGGCAGTACAAGCAGATACTTTAATGCTGGGAGTTCAACTGATCATCATATATCTTCAGAACTACGGCCAGAGAAGCCAAATATAGATTCCCAATATATGCCTTGGGATCATGTTACTACGACACCTACATTCAGAGGTGGTGGCCTGTCAATTAGGGGTGAGAGTTCTTCAAGGAATGTGAGGAGTCGTTCTGCACTGGATTTGGAATCCAACCTTGCTAGAACCCATTTATCCAGTAATCATTTGCACAACTCCTACTCTGCTGACCTCCCAGTTGAGCATTCTAGCATGGTAGATCTTTCAGGTCAGACTTCTAGTGCTTTGGCGAGGGATTGGAGCCAAATGAGTATATCTCCTGCCCATGGAAGGGTTTTATTACCAGATACAAATGCTTTCAGTCTTGAGGCAAGTCATTTCCTTATTGGAAGTGGTACTACTGCTAGTAATGCTTCCATAGATGTTGGGACTTTCCATCCGGAACAACCTAGTACAAGCAGAAACCCTCCTGCTCCTCAAAATTTTCATAACCATCTGACTCAGACTGCTAGGGGAGTTAGAAGTAATTATTCTCAGAGATCCACTCCAACTTTTAGGGCTTCTCCAGGCTTATGCTTGGGATATGTGACTTCTTCAGATGATGGATTGCCTATGGTAGCTGAAAATTACTCTTCTAGACATCCAAGGCCATCTTCCACCAGTCGCTGGCGGAACAATGATAGAAACGGGAGGTCAAGAGTATCTAGTGATAGGCATCGATCATTGATTAACCAGGGTTTCATTGCTGTTGAGCACGCTTCACTATATGGTTCTAGGAACATGCTTGACCAGCACAGAGACATGAGGATGGACATAGACAACATGAGTTATGAGGAACTACTTGCACTTGGGGAGAGGATTGGCCATGTGAACACAGGATTGTCTGAGGATATGCTTTCTAAGTGTTTGACTGAATCAATATATTGTTCATCTGACCAAACCCAAGATGAAGCAACCTGTGTAGTCTGCCTTGAAGAATATAAGAACATGGACGATGTTGGGACACTTAAAACTTGTAAACATGACTACCATGTTAGCTGCATTAAAAAGTGGTTATCTATGAAGAAAATATGTCCTATCTGCAAAGCTTCTGCTTTGCCTGAGAACACAAAGGATAAATAA 1941 0.4225 MLANLSPICPVTCTCSSQILPVLLLWNLTFIVTAKKVVRFSGDWYNELSSTVFTEYSLDTTQSLRLEGALSVSVKGCASKIASNCELFADLTWLHCLLNPEITSDRMGHRHFYNTTPTFEGEPDQNWNHMHADQHHVHLGMPNTSENGSFIYPVESMSSDSASFPSHWNSTTSSNGYALSTLNIEVPPHQSDASGTSNNHFMHSSSAGAFFAVSENYEHQPSSGYDGQAFHCNGGFIDLTIGSGRGTHKRKSPGISPVYERGSTSRYFNAGSSTDHHISSELRPEKPNIDSQYMPWDHVTTTPTFRGGGLSIRGESSSRNVRSRSALDLESNLARTHLSSNHLHNSYSADLPVEHSSMVDLSGQTSSALARDWSQMSISPAHGRVLLPDTNAFSLEASHFLIGSGTTASNASIDVGTFHPEQPSTSRNPPAPQNFHNHLTQTARGVRSNYSQRSTPTFRASPGLCLGYVTSSDDGLPMVAENYSSRHPRPSSTSRWRNNDRNGRSRVSSDRHRSLINQGFIAVEHASLYGSRNMLDQHRDMRMDIDNMSYEELLALGERIGHVNTGLSEDMLSKCLTESIYCSSDQTQDEATCVVCLEEYKNMDDVGTLKTCKHDYHVSCIKKWLSMKKICPICKASALPENTKDK 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1153 646 SMART ring_2 593 634 IPR001841 -
Lal11g1153 646 MobiDBLite consensus disorder prediction 244 263 - -
Lal11g1153 646 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 558 639 IPR013083 -
Lal11g1153 646 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 107 642 IPR045191 GO:0061630
Lal11g1153 646 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 107 642 - -
Lal11g1153 646 MobiDBLite consensus disorder prediction 271 294 - -
Lal11g1153 646 MobiDBLite consensus disorder prediction 412 437 - -
Lal11g1153 646 SUPERFAMILY RING/U-box 583 638 - -
Lal11g1153 646 MobiDBLite consensus disorder prediction 479 511 - -
Lal11g1153 646 Pfam Ring finger domain 592 635 IPR001841 -
Lal11g1153 646 ProSiteProfiles Zinc finger RING-type profile. 593 635 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1153 Lal-Chr11 15216989 15223358 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1153 107 645 C3H Transcription Factor Family AT2G37150 40.288 1.22e-104 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1153 - - gmx:100803627 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1153 11 15216989 15223358 Lal11g1153 11 15216989 15223358 ECH
Lal11g1153 11 15216989 15223358 Lal1g1823 1 20573847 20580341 LSH