Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1148 ATGGCGAACGATTCGTCGTTTTTATTCGCCGGAATTCGTTTCGATAGAAAGAAATTCGCCACCGATATTTCCAAGTTCCAGAAAAAAGATAGCGATAGTTCCATCAATGTTACGAGCTCGGTTGAACTTGAAACCGAGAAACCGGAGGAACCGGTGAAAGAGAAAGCACCGTCGTTGAAGAAGAGAAAGCGCAAGGGAACCTCATCTTCCGAAGAAGCTGTTGAGGGATTCAGTGTGTTTAGAAATTCAACAACTGAAAAGAAACAAGTGCAGAAATCAAAGGATGATGAAGATGATGAGTCAATTCAGCTTAAGAAGGAACAAAATATTCAACTTGAGCGTGACTCGCTGTTCAGGAAGAAGCATAACATTCATGTTTCTGGGTATAATGTGCCATCCCCGCTTGAATTTTTTGATGAATTGAAATCAAGATACAAATGTAAGTCATATTTATTGCGGAATCTAGCAGAACTTGGATTCAAAGAACCAACACCAATCCAACGGCAGGCTATCCCAGTACTTTTACATGGACGCGAATGCTTTGCTTGTGCCCCAACTGGCTCTGGAAAAACCTTTGCATTTGTCTGCCCCATGCTTATGAAGCTTAAGGATCCAGCAAAAGATGGAATTCGAGCTCTTATTGTTTGTCCTACCCGCGAATTATCTGCACAAACATATCGAGAGTGCAAAAAACTGGCTAAAGGAAAAAAATTTCGTATCAAGTTAGTGACTAAACAGCTTATGAGAAATGCGGATTTTTCAAAGTTTACATGTGATGTACTTATATCCACACCACTTCGGTTACGCTTTGCTATCCGGAGGAAAAAGATTGATCTCAGCAGAATTGAGTATCTTGTCCTGGATGAATCTGATAAGCTATTTGAGCCTGTATTATTTAAGCAGATTGATACTATTATCAAAGCATGCTCGAACCCCTCAATAATACGCTCACTGTTCAGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTAGAGAACTCATGCATGATGCTGTTCGGGTAATTGTTGGCAGGAAGAATATGGCTTCTGAAACAATAAAGCAAAAGTTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTCTAGCAATTCGTCAAAGCTTTGCTGAGAGTCTAAAACCTCCAGTATTGGTCTTTGTCCAAAGCAAGGAGCGCGCGAAGGAGCTTTATGGTGAACTTGCATTTGACAACATTAGAGTTGATGCCGTCCATTCTGATTTGTCTCAAGAAGAGCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAGACATGGGTTTTGATTGCCACTGATGTAGTTGCTCGGGGCATGGATTTCAAAGGAGTGAACTGTGTGATCAATTATGATTTCCCAGATTCTGGTGCTTCATATGTCCATAGGATTGGTCGTTCTGGCAGAGCAGGGAGGTCCGGAGAAGCAATTACTTTTTACACAGAGGACGATATTCCATTCCTACGGAATATAGCGAATCTGATGGCAGCATCAGGCTGTGAGGTTCCAGCCTGGCTCATGGACTTGCGCAAAAAGAAGTGGAAGAAACACAGGCCTAAAAGAGATGCAATTTCAACCAAAGTAAAGCTATAA 1602 0.4139 MANDSSFLFAGIRFDRKKFATDISKFQKKDSDSSINVTSSVELETEKPEEPVKEKAPSLKKRKRKGTSSSEEAVEGFSVFRNSTTEKKQVQKSKDDEDDESIQLKKEQNIQLERDSLFRKKHNIHVSGYNVPSPLEFFDELKSRYKCKSYLLRNLAELGFKEPTPIQRQAIPVLLHGRECFACAPTGSGKTFAFVCPMLMKLKDPAKDGIRALIVCPTRELSAQTYRECKKLAKGKKFRIKLVTKQLMRNADFSKFTCDVLISTPLRLRFAIRRKKIDLSRIEYLVLDESDKLFEPVLFKQIDTIIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLLAIRQSFAESLKPPVLVFVQSKERAKELYGELAFDNIRVDAVHSDLSQEERENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSGASYVHRIGRSGRAGRSGEAITFYTEDDIPFLRNIANLMAASGCEVPAWLMDLRKKKWKKHRPKRDAISTKVKL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1148 533 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 530 - -
Lal11g1148 533 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 171 341 IPR014001 -
Lal11g1148 533 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 6 530 - -
Lal11g1148 533 Gene3D - 341 518 IPR027417 -
Lal11g1148 533 Gene3D - 78 340 IPR027417 -
Lal11g1148 533 MobiDBLite consensus disorder prediction 28 106 - -
Lal11g1148 533 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 352 513 IPR001650 -
Lal11g1148 533 SMART helicmild6 393 474 IPR001650 -
Lal11g1148 533 Pfam DEAD/DEAH box helicase 164 328 IPR011545 GO:0003676|GO:0005524
Lal11g1148 533 Pfam Helicase conserved C-terminal domain 373 474 IPR001650 -
Lal11g1148 533 CDD SF2_C_DEAD 353 483 - -
Lal11g1148 533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 486 IPR027417 -
Lal11g1148 533 MobiDBLite consensus disorder prediction 87 106 - -
Lal11g1148 533 MobiDBLite consensus disorder prediction 43 57 - -
Lal11g1148 533 CDD DEADc_DDX52 151 344 IPR044764 GO:0003724|GO:0005524|GO:0030490
Lal11g1148 533 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 140 168 IPR014014 GO:0003724
Lal11g1148 533 SMART ultradead3 159 356 IPR014001 -
Lal11g1148 533 MobiDBLite consensus disorder prediction 71 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1148 Lal-Chr11 15184226 15189174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1148 134 512 Eukaryotic Initiation Factors Gene Family AT3G19760 32.283 1.88e-57 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1148 K14779 - gmx:100800969 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1148 11 15184226 15189174 Lal11g1148 11 15184226 15189174 ECH