Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1142 ATGGCAGCAGCAGCAGCAGCTCGTCCCCTTGTAACCGTTCAGACCGTCACCGGCGACATTGCCACCGACGCAACCCCCACCGTCGCTCTCCCCGACGTCATGAAGGCCTCAATCCGCCCCGACATCGTCAACTTCGTCCACTCCAACATCTCACGTAACAGCCGCCAACCTTACGCCGTGAGCCGCAGCGCTGGTCACCAGACCTCAGCCGAGTCATGGGGAACCGGACGTGCTGTCTCCCGTATCCCTCGTGTCTCCGGAGGCGGAACACACCGCGCCGGACAAGCCGCGTTCGGAAACATGTGCCGCGGTGGCCGCATGTTCGCTCCTACCAGGATCTGGCGCCGCTGGCACCGCAAAGTCAACATCAACCAAAAGCGTTACGCAATCGTCTCCGCTATTGCTGCCTCAGCGATCCCCTCACTGGTCCAAGCCCGAGGCCACAAGATCGAAACTGTTCCTGAACTCCCCTTAGTCGTTAGCGACACCGTCGAAGGAGTCGAAAAAAGCAAGGAAGCGATCAAGGTATTGAAGGAAATTGGCGCCTTCAGCGACGCTGAGAAGGCGAAAGATAGCCGCGGTATTCGTCCTGGTAAGGGAAAAATGCGTAACCGTCGCTACATTTCTCGCAAGGGACCTTTGATTGTGTATGGAACCGAAGGTGCGAAAGCGGTTAAAGCTTTCCGTAACATTCCAGGTGTTGAGCTTGCCAATGTGGAGAGATTGAACCTTCTGAAACTGGCACCTGGCGGTCATCTAGGTCGTTTTGTTGTGTGGACTAAATCTGCATTTGAGAAATTGGATTCGATCTATGGAACCTTCGAGAAGGGTTCTGAGAAGAAGAATGGTTACATTTTGCCCAGGTCAAAATTGGTGAATGCTGACCTTGCTAGGATTATTAACTCTGACGAGGTTCAATCCGTGGTTAAGCCTATTAAGAAGGAGGTTAAGAGGAGTGGTATTAAGAAGAATCCACTAAAGAATTTGAATGTTATGTTGAAGCTGAATCCTTATGCTAAAACTGCCAAGAGGATGGCTCTTTTGGCCGAGAAGCAGCGCCTTGTTGCGAAGAAGGAGAAGCTCGATAAAAAGCGTGGCACGGTCCCTAAGGCGGAGGCTTCTGCTATCAAGGCTGCAGGCAAAGCATGGTACAAAACTATGGTGTCTGACTCTGATTATGCTGAATTTGACAACTTCTCCAAGTGGCTCGGTGTTTCACAGTGA 1224 0.5212 MAAAAAARPLVTVQTVTGDIATDATPTVALPDVMKASIRPDIVNFVHSNISRNSRQPYAVSRSAGHQTSAESWGTGRAVSRIPRVSGGGTHRAGQAAFGNMCRGGRMFAPTRIWRRWHRKVNINQKRYAIVSAIAASAIPSLVQARGHKIETVPELPLVVSDTVEGVEKSKEAIKVLKEIGAFSDAEKAKDSRGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVELANVERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGTFEKGSEKKNGYILPRSKLVNADLARIINSDEVQSVVKPIKKEVKRSGIKKNPLKNLNVMLKLNPYAKTAKRMALLAEKQRLVAKKEKLDKKRGTVPKAEASAIKAAGKAWYKTMVSDSDYAEFDNFSKWLGVSQ 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1142 407 MobiDBLite consensus disorder prediction 57 96 - -
Lal11g1142 407 MobiDBLite consensus disorder prediction 57 75 - -
Lal11g1142 407 Pfam 60S ribosomal protein L4 C-terminal domain 283 353 IPR025755 -
Lal11g1142 407 Pfam Ribosomal protein L4/L1 family 29 268 IPR002136 GO:0003735|GO:0005840|GO:0006412
Lal11g1142 407 ProSitePatterns Ribosomal protein L1e signature. 122 148 IPR013000 -
Lal11g1142 407 PANTHER 60S RIBOSOMAL PROTEIN L4 3 407 IPR045240 -
Lal11g1142 407 Coils Coil 344 364 - -
Lal11g1142 407 SUPERFAMILY Ribosomal protein L4 19 269 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lal11g1142 407 PANTHER BNAC03G35890D PROTEIN 3 407 - -
Lal11g1142 407 Gene3D - 5 310 IPR023574 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1142 Lal-Chr11 15148955 15151227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1142 3 407 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 81.481 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1142 K02930 - gmx:100779764 694.886