Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1141 ATGGCCGATGCACCGGGAAGCCCTGGCGGCGGAAGCCACGAGAGTGGGGACCACAGTCCACGTTCCAATATCAGGGAACAAGATAGGTACCTTCCGATCGCTAACATTAGTCGTATCATGAAGAAGGCGCTTCCCGCCAATGGAAAAATTGCTAAGGATGCTAAAGAAACTGTTCAAGAATGCGTCTCTGAATTCATCAGCTTCATTACCAGCGAGGCCTCTGATAAGTGTCAGAGAGAGAAGAGGAAGACTATTAATGGTGATGATTTGCTTTGGGCTATGGCTACTCTTGGTTTCGAGGATTATATCGATCCCTTGAAGATTTACCTCGGCAGATACAGAGAGGGTGATACCAAGGGATCAGCCAAGGGTGGAGAGACATCTGCTAAGAAAGATCAACCAAATCCTAATGTTCAGCTTGCTCACCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAAATTCTCAGGTAACTCTGCTCTTTCTTCATGTGCTTCTAGGCTGTCATGTTGAGTGTTGA 519 0.4644 MADAPGSPGGGSHESGDHSPRSNIREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLGRYREGDTKGSAKGGETSAKKDQPNPNVQLAHQGSFSQGVSYTNSQVTLLFLHVLLGCHVEC 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1141 172 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Lal11g1141 172 SUPERFAMILY Histone-fold 27 128 IPR009072 GO:0046982
Lal11g1141 172 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lal11g1141 172 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Lal11g1141 172 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Lal11g1141 172 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Lal11g1141 172 Gene3D Histone, subunit A 17 150 IPR009072 GO:0046982
Lal11g1141 172 MobiDBLite consensus disorder prediction 1 27 - -
Lal11g1141 172 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 157 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lal11g1141 172 MobiDBLite consensus disorder prediction 119 140 - -
Lal11g1141 172 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1141 Lal-Chr11 15141275 15142859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1141 17 164 CCAAT-HAP3 Transcription Factor Family AT3G53340 75.484 2.09e-78 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lal11g1141 CBFD_NFYB_HMF 1.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1141 K08065 - gmx:100798667 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1141 11 15141275 15142859 Lal12g0926 12 7776026 7779315 PCT
Lal12g0926 12 7776026 7779315 Lal11g1141 11 15141275 15142859 PCT