Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1138 ATGGGGTTGATCATGGAGGTTATATACTTGCTTCGACAATTGATGGATAAATACGATGGCTTTCACATGTTTTTCGTTAATTTGGAGAAGATGTATCATAAGGTGCCTAGACAATTATTGCGGAAAGATCTAGATAAGAAAGGAGTTCGGATTGTCTACATTCAAGCAATCAAGGATGTGAAGACACGAGGAATGGGAGCTGCCCGCAAGCTGAAGTCCCACCGTAGGAGGCAAAGGTGGGCAGACAAGTCATACAAGAAATCTCATCTCGGCAACGAGTGGAAGAAGCCTTTTGCTGGTTCATCCCATGCAAAGGGTATTGTCCTGGAAAAGATAGGTATTGAGGCTAAGCAGCCCAACTCTGCTATTCGTAAATGCGCCAGGGTTCAACTCATTAAAAATGGAAAGAAGATTGCTGCATTTGTGCCAAATGATGGCTGCTTAAACTACATTGAGGAAAATGATGAAGTTTTGATCGCCGGATTTGGACGAAAAGGTCACGCTGTGGGTGATATTCCTGGAGTCAGATTCAAGGTTGTGAAGGTCTCTGGTGTATCTCTCCTGGCTCTTTTCAAGGAGAAGAAAGAGAAGCCAAGGTCTTAA 603 0.4362 MGLIMEVIYLLRQLMDKYDGFHMFFVNLEKMYHKVPRQLLRKDLDKKGVRIVYIQAIKDVKTRGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1138 200 ProSitePatterns Ribosomal protein S12 signature. 117 124 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lal11g1138 200 Gene3D - 83 200 IPR012340 -
Lal11g1138 200 CDD Ribosomal_S23 84 197 IPR005680 GO:0003735|GO:0006412|GO:0015935
Lal11g1138 200 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 45 200 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lal11g1138 200 PANTHER BNACNNG03140D PROTEIN 45 200 - -
Lal11g1138 200 Pfam Ribosomal protein S12/S23 89 199 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lal11g1138 200 TIGRFAM uS12_E_A: ribosomal protein uS12 64 199 IPR005680 GO:0003735|GO:0006412|GO:0015935
Lal11g1138 200 SUPERFAMILY Nucleic acid-binding proteins 78 198 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1138 Lal-Chr11 15115002 15118487 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1138 61 200 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 95.714 4.12e-94 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1138 K02973 - fve:101303309 282.722