Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1123 ATGAAGAGACAAATAGACAATGAAGGGAATGTAGAATTTGAGTGCAAGACTTGCACCCGCACATTCTCTTCTTTTCAAGCCCTTGGTGGCCACAGTGCTAGTAGCCACAAAAGGGTTAAGCTAGTTAGTGAAGAACTTAAAGAACAAGCAAAGTCTTTAAGTTTGTGGAATCAACCAAAATTGCATGAGTGCTCAATTTGTGGCATGGAATTCTCTCTAGGCCAAGCACTAGGAGGCCACATGAGAAAGCATATTCACAATGAAGGGTTTTCTTCTATTAACCATGTTATTGCAAAAAACACAGTTATGAAAAGATCCAATTATACAAGGTTTATGTGCTTGGACTTGAACTTGACCCCTCTTGAGAATGACTTGTTGTTTAGAAAGAAGGCACCCATAGTTCCTCTTTCTTTATTTTGA 420 0.3881 MKRQIDNEGNVEFECKTCTRTFSSFQALGGHSASSHKRVKLVSEELKEQAKSLSLWNQPKLHECSICGMEFSLGQALGGHMRKHIHNEGFSSINHVIAKNTVMKRSNYTRFMCLDLNLTPLENDLLFRKKAPIVPLSLF 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1123 139 ProSitePatterns Zinc finger C2H2 type domain signature. 15 36 IPR013087 -
Lal11g1123 139 ProSitePatterns Zinc finger C2H2 type domain signature. 64 86 IPR013087 -
Lal11g1123 139 SUPERFAMILY beta-beta-alpha zinc fingers 13 84 IPR036236 -
Lal11g1123 139 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 89 IPR013087 -
Lal11g1123 139 Gene3D Classic Zinc Finger 10 84 - -
Lal11g1123 139 Pfam C2H2-type zinc finger 62 84 - -
Lal11g1123 139 Pfam C2H2-type zinc finger 13 38 - -
Lal11g1123 139 SMART c2h2final6 13 36 IPR013087 -
Lal11g1123 139 SMART c2h2final6 62 84 IPR013087 -
Lal11g1123 139 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 41 IPR013087 -
Lal11g1123 139 PANTHER ZINC FINGER PROTEIN ZAT5 9 132 - -
Lal11g1123 139 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 9 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1123 Lal-Chr11 14974083 14974502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1123 12 135 C2H2 Transcription Factor Family AT2G37430 49.219 9.82e-29 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal11g1123 zf-C2H2_6 2e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1123 - - aprc:113870747 184.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1123 11 14974083 14974502 Lal13g1101 13 8377071 8377469 PCT
Lal13g1101 13 8377071 8377469 Lal11g1123 11 14974083 14974502 PCT