Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1122 ATGAAGAGACAAAGAGATATCGAAGTATTAGAGAGCATAGACTTGGCTAATTGTGTCATGCATCTAACTCATCCACAACAACAACGTGACCCTATGGAATTTGAGTGCAAGACATGCAACAGAAAATTCTCATCCTTTCAAGCACTAGGTGGCCACATGACTAGTCACAAGAGGCCAAAATTTGAGGCTAAAGAAACAATAGCACAAGCTAAAACTCTTTCTCTTAAGTTAGGGAACAAACCCAAATTTCATAAGTGCTGTATTTGTGGACAAGAATTCTCTCTAGGACAAGCACTTGGAGGCCACATGAAAAGGCATAGAGGTGCCATCAATGAAGATATTTCTTCAATAAAAAAGGTTGTTGTTGTTGCAAAAGTAGCACCACTTTTGAAAAGATCAAATAGCATAAGGGTTATGTGGCTGGACTTGAACTTCACACCGCTAGAGAATGATTTTAATTTATTGTTTGAATTGTTCGTTTATTTGCCTTCTCACTTAATGGTGTTGCTTTTCAACAAGAAACATTCCACTGTTGGTTACAAAACACTTGGATGTGCATTAGCAAAACAATAG 573 0.3752 MKRQRDIEVLESIDLANCVMHLTHPQQQRDPMEFECKTCNRKFSSFQALGGHMTSHKRPKFEAKETIAQAKTLSLKLGNKPKFHKCCICGQEFSLGQALGGHMKRHRGAINEDISSIKKVVVVAKVAPLLKRSNSIRVMWLDLNFTPLENDFNLLFELFVYLPSHLMVLLFNKKHSTVGYKTLGCALAKQ 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1122 190 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Lal11g1122 190 SMART c2h2final6 84 106 IPR013087 -
Lal11g1122 190 SMART c2h2final6 34 56 IPR013087 -
Lal11g1122 190 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Lal11g1122 190 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Lal11g1122 190 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 153 - -
Lal11g1122 190 PANTHER ZINC FINGER PROTEIN ZAT5 1 153 - -
Lal11g1122 190 SUPERFAMILY beta-beta-alpha zinc fingers 34 106 IPR036236 -
Lal11g1122 190 Gene3D Classic Zinc Finger 31 106 - -
Lal11g1122 190 Pfam C2H2-type zinc finger 34 59 - -
Lal11g1122 190 Pfam C2H2-type zinc finger 84 108 - -
Lal11g1122 190 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1122 Lal-Chr11 14968804 14969536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1122 1 156 C2H2 Transcription Factor Family AT2G37430 44.118 1.27e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal11g1122 zf-C2H2_6 2.6e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1122 - - lang:109333947 259.225