Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1116 ATGGCGTTCTTATCGAGACTTCAGCGTCTTCTTCAACACTCATCATTTCTTCCTTCTTCACACTTTATTTCTTCCATTCGTCTCAGTTCAACTCTCACTTCCCCCAAACTTTTTATTAGCGGTCTTTCTAGACTGACAACAGATGACAAACTAAAGGAAACATTTTCTTCTTTCGGGCAGTTACTCGAAGCTAAGGTGATAACTGATAGAGCCTCTGGAAGATCAAAGGGATTTGCTTTTGTAACTTATGCATCCATAGAAGAAGCTGAAAAGGCAAGAGAAGGAATGAATGCTAAGTTTTTGGATGGATGGGTTATATTTGTTGATCCTGCCAAACCAAGAGAACCAAGACCTCCTCCTCAGCAATCACAGTCTCAACCTTCTGAAACAGGTTTCACAGTTAACAAAACCATTGGTTGGACTGGTTGA 429 0.4056 MAFLSRLQRLLQHSSFLPSSHFISSIRLSSTLTSPKLFISGLSRLTTDDKLKETFSSFGQLLEAKVITDRASGRSKGFAFVTYASIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPQQSQSQPSETGFTVNKTIGWTG 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1116 142 SMART rrm1_1 36 109 IPR000504 GO:0003723
Lal11g1116 142 Gene3D - 27 135 IPR012677 -
Lal11g1116 142 SUPERFAMILY RNA-binding domain, RBD 34 127 IPR035979 GO:0003676
Lal11g1116 142 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 142 - -
Lal11g1116 142 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 103 IPR000504 GO:0003723
Lal11g1116 142 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Lal11g1116 142 MobiDBLite consensus disorder prediction 111 142 - -
Lal11g1116 142 MobiDBLite consensus disorder prediction 124 142 - -
Lal11g1116 142 PANTHER NUCLEOLAR PROTEIN 8 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1116 Lal-Chr11 14902869 14905875 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1116 9 117 Eukaryotic Initiation Factors Gene Family AT4G34110 34.746 1.41e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1116 - - lang:109334292 214.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1116 11 14902869 14905875 Lal11g1116 11 14902869 14905875 ECH