Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1113 ATGGCCGCCTCATCACGGCGGCTCCGGGACCTTCAATCTCATCCAGGCAACAAGATCTGTGTTGACTGTTCCCAAAAGAACCCTCAATGGGCCTCAGTCTCCTACGGCATCTTCATGTGTCTAGAATGTTCTGGAAAACACCGTGGCCTCGGCGTTCATATCTCCTTCGTTCGATCCGTTACTATGGATTCATGGTCTGATATTCAGATCAAGAAAATGGAAGCTGGTGGCGGCAACGATAATCTCAATGCGTTTCTCGCCAATTACGGTATTCCTAAAGAAACTGATATTGTTACCAAATACAATACCAACGCCGCCACGGTTTACCGTGATAAGGTTCAGGCCATCGCTGATGGCCGTCCCTGGCGCGATCCACCGGTGGTTAAGGAGAATCTTCATAGCGGTAAGGGGAAACCGCCGATGGGAGGAGCTAGAGTTTCTGCCGGAGGAGGAGGTCCGGGTTGGGATAATTGGGATGATGATGGTTATGGATCGAGAAATAATGATATTAGGAGAAATCAGAGTAGTGGTGATGTTAGAGGAGGGATTGGTGGTGATAGTGGAGGAGCACCGGCGCGGTCGAAATCGACGCAGGATATTTATACTCGGTCGCAATTGGAGGCTTCTGCTGCTAATAAGGAGAGTTTCTTTGCACAGAAGATGGCGCAGAATGAGTCGCGGCCGGAGGGTCTTCCGCCGTCGCAGGGTGGAAAGTATGTTGGGTTTGGATCGAGTCCGGCACCTTCCCAGAGGAGTAGTAATCAGCAGAATGATTATTATTCTGTTGTTTCTCAGGGGATTGGTAAATTATCATTGGTTGCTCAATCTGCTGCTAGTGTTGTTCAGGCAGGCACCAAAGAGATCACTGCTAAGAGTCAGTTTGCACATAGTTTAGACTTTAAAAGAGAGAAAACTGTAATGGGTAGGATAAAGTTGGACTCTCTCTATGTGCTGCTGCTTTCCTCTTTAAACCTGCATCATCGGTGCCTTATGAAAACCTCTAATGCCTTGCTTGACCTGGTGGTAAAGGATGGTGGTTATGATCAAAAAGTGAACGAAACTGTCACTGTTGTTACACAGAAGACATCAGAGATTGGACAAAGGACATGGGGTATAATGAAAGGAGTAATGGCTATGGCTTCACAGAAGGTTGGAGAGTACACTAGAGACAACCCAAGTTTGAAGTCTGATAACTGGCAACAAAACGAAAGTAATAGAAATGGTTCGTATCAGGAGTACAATCAAGAGAATAGCGGCTGGAATTCTTCTTCGAGAGGAGGACAGCCTTCATCTGTTGGACAAACTAATACTTATCACTCAAACTCTTCAGATGATTGGGGCCTCAAAGATTCTAGGAAGGAAGAACCAGCGAAAGGGTCAAGTCCTCAGTCATCTAATACTCACAATTCAAGCTCTTGGGATGATTGGGACCACGAGTATACTGTGAAGAAAGAACCAGCTAAAGCACCAGCTTCCCATACTAGTGATGCTTGGGCTGGCTGGGATGATGGATTTGACAGTCGTAATGCATCTAATAATAAAACTGTTGGTCATAATGGGAAGTCAGATTCCGCTTGGACTGCAGGAGGATTTCATTAA 1599 0.4622 MAASSRRLRDLQSHPGNKICVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSDIQIKKMEAGGGNDNLNAFLANYGIPKETDIVTKYNTNAATVYRDKVQAIADGRPWRDPPVVKENLHSGKGKPPMGGARVSAGGGGPGWDNWDDDGYGSRNNDIRRNQSSGDVRGGIGGDSGGAPARSKSTQDIYTRSQLEASAANKESFFAQKMAQNESRPEGLPPSQGGKYVGFGSSPAPSQRSSNQQNDYYSVVSQGIGKLSLVAQSAASVVQAGTKEITAKSQFAHSLDFKREKTVMGRIKLDSLYVLLLSSLNLHHRCLMKTSNALLDLVVKDGGYDQKVNETVTVVTQKTSEIGQRTWGIMKGVMAMASQKVGEYTRDNPSLKSDNWQQNESNRNGSYQEYNQENSGWNSSSRGGQPSSVGQTNTYHSNSSDDWGLKDSRKEEPAKGSSPQSSNTHNSSSWDDWDHEYTVKKEPAKAPASHTSDAWAGWDDGFDSRNASNNKTVGHNGKSDSAWTAGGFH 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1113 532 SMART arf_gap_3 2 122 IPR001164 GO:0005096
Lal11g1113 532 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 460 531 - -
Lal11g1113 532 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 341 464 - -
Lal11g1113 532 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 306 - -
Lal11g1113 532 ProSiteProfiles ARF GTPase-activating proteins domain profile. 5 122 IPR001164 GO:0005096
Lal11g1113 532 MobiDBLite consensus disorder prediction 506 522 - -
Lal11g1113 532 Pfam Putative GTPase activating protein for Arf 6 108 IPR001164 GO:0005096
Lal11g1113 532 SUPERFAMILY ArfGap/RecO-like zinc finger 6 110 IPR037278 -
Lal11g1113 532 MobiDBLite consensus disorder prediction 221 256 - -
Lal11g1113 532 MobiDBLite consensus disorder prediction 472 490 - -
Lal11g1113 532 MobiDBLite consensus disorder prediction 119 199 - -
Lal11g1113 532 MobiDBLite consensus disorder prediction 388 532 - -
Lal11g1113 532 PRINTS HIV Rev interacting protein signature 17 36 IPR001164 GO:0005096
Lal11g1113 532 PRINTS HIV Rev interacting protein signature 36 53 IPR001164 GO:0005096
Lal11g1113 532 PRINTS HIV Rev interacting protein signature 57 78 IPR001164 GO:0005096
Lal11g1113 532 Gene3D Arf GTPase activating protein 2 125 IPR038508 -
Lal11g1113 532 CDD ArfGap_ArfGap1 4 119 - -
Lal11g1113 532 MobiDBLite consensus disorder prediction 388 444 - -
Lal11g1113 532 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 306 IPR044519 GO:0005096|GO:0016192
Lal11g1113 532 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 460 531 IPR044519 GO:0005096|GO:0016192
Lal11g1113 532 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 341 464 IPR044519 GO:0005096|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1113 Lal-Chr11 14859034 14863235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1113 6 88 C2H2 Transcription Factor Family AT4G05330 49.425 6.53e-23 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1113 K12492 - gmx:100778302 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1113 11 14859034 14863235 Lal11g1113 11 14859034 14863235 ECH
Lal11g1113 11 14859034 14863235 Lal12g0886 12 7301378 7308792 PCT
Lal11g1113 11 14859034 14863235 Lal13g1083 13 8154782 8160179 PCT
Lal11g1113 11 14859034 14863235 Lal24g0816 24 6456968 6462609 PCT
Lal12g0886 12 7301378 7308792 Lal11g1113 11 14859034 14863235 PCT
Lal13g1083 13 8154782 8160179 Lal11g1113 11 14859034 14863235 PCT
Lal24g0816 24 6456968 6462609 Lal11g1113 11 14859034 14863235 PCT