Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1108 ATGGAAGCCAAAAGCAGAAACATAATGGCACCTCAAGACTTAGCCACCAAATTAACGGCACTTGTTGTAGATGACAATAGAATTAGCCGAAAGATTCATCAAAAGCTTTTGAACAATGTTGGAATGAAAAATGAAGGAGTGGGAAATGGAAAAGAAGCTGTAGATATTCATTGCTATGGACAAAGCTTTGACCTAATTCTCATGGACATGGATATGCCCATCATGAATGGTATTGAGGCAACAAAGATACTACGCTCAATGGGAATTTGTAGCATGATAGTTGGTGTTTCATCACGCTCTATGGAATCTGAGATACAAGAATTTATGGAAGCAGGTCTTGATGATTATCAAGTTAAACCCTTAACAAATTCTAAGCTTAGATCAATTCTATATAAGATAAACCCCAACTTTACTTTTAAGTGA 423 0.3617 MEAKSRNIMAPQDLATKLTALVVDDNRISRKIHQKLLNNVGMKNEGVGNGKEAVDIHCYGQSFDLILMDMDMPIMNGIEATKILRSMGICSMIVGVSSRSMESEIQEFMEAGLDDYQVKPLTNSKLRSILYKINPNFTFK 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1108 140 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 7 136 - -
Lal11g1108 140 SMART REC_2 18 130 IPR001789 GO:0000160
Lal11g1108 140 CDD REC_hyHK_CKI1_RcsC-like 21 130 - -
Lal11g1108 140 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 136 - -
Lal11g1108 140 Pfam Response regulator receiver domain 21 129 IPR001789 GO:0000160
Lal11g1108 140 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Lal11g1108 140 SUPERFAMILY CheY-like 17 133 IPR011006 -
Lal11g1108 140 Gene3D - 2 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1108 Lal-Chr11 14824248 14825457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1108 4 126 Response Regulator Gene Family AT3G04280 42.400 2.43e-26 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal11g1108 Response_reg 1e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1108 - - gmx:100794931 195.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1108 11 14824248 14825457 Lal11g1108 11 14824248 14825457 ECH
Lal11g1108 11 14824248 14825457 Lal1g1865 1 20919674 20920787 LSH
Lal11g1108 11 14824248 14825457 Lal20g0048 20 350911 352147 LSH