Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1080 ATGGAAGCACACCCTGCTATCTCTGTTGACAGATCAAGTGCAAAGCAACTCAATAACTTGGGGATGGCTGAAGCACTTCCTTTATCGTTCCCTGGCCATATGTTTTCATCATCGCCTGGATATTCAACTGATCTTCATCATTCATCTCTTTCACCTCATGAGAAACACTCTAGAAAAGGTCATTTCGTTTCACAGTCATTGAGTAACATGGCTTCGTTGCCATTATCTTATTCTTCAAATAATGGACCGGCACCTTCTACATCAACCCATTATTTCGAAGGAAACAATGTTTCCTGGCATACAGACGGCTTTCTTGATTTTCCTGATAACACTTCAACTGATAATAGTCAAGTAGAGAGCAGTGCCTGCACTGTTATGGCATCTGAAGAGTATTCTAAGCGAAACGATTGGCTGGCATGGGCTGACCAGCTTATCAGTGATGATGACACTTCTAATTGGAATGGTCTTCTTTCTGACAACATTCAAGATCTTGAACCAATGGTGGGGTGCCAGGTTGCAAAACCACTTTCACAATTTCCATCTGGGCACCAATCCCAAGGCCATAAAAAATTTCCTGTTTCATCTGGAGAAAACCATGTTGGTGCCGCCCCGTCGTCCTTAGCAAATTCTTCACCGGCCAAGTCACGTATGCGTTGGACACCTGAGCTTCATGAGGCCTTTGTCGAGGCTGTCAGCCAACTTGGTGGGAGTGAAAGAGCTACCCCTAAGGGTGTGCTGAAAGTCATGAAAGTTGAAGGATTAACTATATATCATATTAAAAGCCACTTACAGAACTACAGGACAGCTAGATATAAACCAGAGTCATATGAAGGATATGCAGACAAAAAACTAAGTGCCATTGGAGATGTGTCATCTCTATATTTGAAAAGTGGTATTGAGATTACTGAAGCTCTGCGGATGCAGATGGAGGTTCAGAAGCAGTTGCATGAACAGCTTGAGATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAAATATCTACAGATGATGTTTGAGAAGCAATGCAAATCTGGCATCGAACCGTTTAAGGCATCATCATCTGCCATTGAGAGTCTATCTGGAGTGCCTTCTGATGCTATGAAAGATTCTTCTTCCGAAATTGAATTGGAAGCTTCCAAAGTGAATGACAGTTGA 1161 0.4229 MEAHPAISVDRSSAKQLNNLGMAEALPLSFPGHMFSSSPGYSTDLHHSSLSPHEKHSRKGHFVSQSLSNMASLPLSYSSNNGPAPSTSTHYFEGNNVSWHTDGFLDFPDNTSTDNSQVESSACTVMASEEYSKRNDWLAWADQLISDDDTSNWNGLLSDNIQDLEPMVGCQVAKPLSQFPSGHQSQGHKKFPVSSGENHVGAAPSSLANSSPAKSRMRWTPELHEAFVEAVSQLGGSERATPKGVLKVMKVEGLTIYHIKSHLQNYRTARYKPESYEGYADKKLSAIGDVSSLYLKSGIEITEALRMQMEVQKQLHEQLEIQRNLQLRIEEQGKYLQMMFEKQCKSGIEPFKASSSAIESLSGVPSDAMKDSSSEIELEASKVNDS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1080 386 MobiDBLite consensus disorder prediction 199 214 - -
Lal11g1080 386 MobiDBLite consensus disorder prediction 362 386 - -
Lal11g1080 386 Pfam Myb-like DNA-binding domain 216 267 IPR001005 -
Lal11g1080 386 Gene3D - 213 272 - -
Lal11g1080 386 Pfam MYB-CC type transfactor, LHEQLE motif 299 346 IPR025756 -
Lal11g1080 386 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 32 382 - -
Lal11g1080 386 SUPERFAMILY Homeodomain-like 212 268 IPR009057 -
Lal11g1080 386 Coils Coil 302 322 - -
Lal11g1080 386 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 32 382 IPR044848 GO:0003700
Lal11g1080 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 271 IPR017930 -
Lal11g1080 386 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 214 268 IPR006447 GO:0003677
Lal11g1080 386 MobiDBLite consensus disorder prediction 178 214 - -
Lal11g1080 386 MobiDBLite consensus disorder prediction 178 192 - -
Lal11g1080 386 MobiDBLite consensus disorder prediction 372 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1080 Lal-Chr11 14483495 14491161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1080 32 386 G2-like Transcription Factor Family AT4G28610 48.087 1.25e-89 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal11g1080 Myb_DNA-binding 7.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1080 - - gmx:100810560 548.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1080 11 14483495 14491161 Lal11g1080 11 14483495 14491161 ECH
Lal11g1080 11 14483495 14491161 Lal12g0639 12 4666526 4670125 PCT
Lal11g1080 11 14483495 14491161 Lal13g1051 13 7780574 7786596 PCT
Lal11g1080 11 14483495 14491161 Lal24g0555 24 3914745 3924588 PCT
Lal12g0639 12 4666526 4670125 Lal11g1080 11 14483495 14491161 PCT
Lal13g1051 13 7780574 7786596 Lal11g1080 11 14483495 14491161 PCT
Lal24g0555 24 3914745 3924588 Lal11g1080 11 14483495 14491161 PCT