Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1073 ATGCAGAATTCTTATGATACGAAAGGTTCAGAACACAGTGACCATCCATTGGTTGCTGGAAGATTAGGGAAATCTTCTTTGAAGAGAGCAAGAACGAAAAGTGAAAATTTGAAAGAAAGAAGGAAACAGTTCATGCCTGAAAGTTCGGCCTATGAAACTGATGGTCTTATGAGAGAGCTGAAGAGGCAAAAAAATCAATCATCTGCAGATGGTTGTGTTCGGCCGAACTCCACAGATCATAATAATTTAGTGGGTTCTTGCTCTAACCTGGACCTTAAATCTGGAAAGGGCCCCGGTGAACTGTTTCGTGCAAATCGAGATGATTCACATTCAAGTACAAGCATCTGTTCGTTCTGCCAGTCCTCTAACATCTCAGAGGCCACCGGTGTAATGCTGCATTGTGCAAATGGATATATGGTTACAGGCGATAACGCAACACAACCAAATCTCATACATGTGCATAAAATTTGCTTTGACTGGGCGCCACAAGTGTATTTTGTCGATGATGCTGTTAAGAATTTGAAATCAGAAGTAGCAAGGGGAGCAAAACTTAAATGCAGCAAATGTGGTCTAAAAGGAGCTGCTCTCGGCTGCCTTGTCAATTCCTGTAGAAAAACTTATCATGCTCCTTGTGCAATGGGCATCTCCACTTGCCGTTTTGATCATGAGAGTTTTCTAATGCTCTGTCCTACTCATGCTCACGTCAAATTTCCAAATGAGAAATTAAGGTCTAAGAAACAGCCAACTCAGAAGTTTCCAGCTTTATCTCATCTGCCATCTTATGAGTCAAACCTTCTCTCACCTTTACAGAATGATAGTAAAAAAGTGGTTTTTTGTGGATCTGCTCTACCAGATGATGAAAAGGTACTTTTGGTCAATTTTGCAGATAAGGTTGGTGCGGTTGTGACCAAGTATTGGACCCGAAATGTCACCCATGTGATTGCTGCAACTGATGAAAATGGAGCATGCTCCAGGACGCTGAAAGTTCTTACGGCAATTCTAAATGGACAATGGATTCTCAAAATGGACTGGGTAAAAGCTTGCATGGAAAGAATGACTATGGTAGAAGAAGAAACATATGAAATTAGTGTTGACAACCAAGGGTGTCATGGTGGCCCAAAAGCTGGTAGACTTAGGGCACTGGCCAATGAACCAAAGCTATTTAGTGGCTTGAAGTTTTATTTTTCTGGGGATTATGTGAGTACTTATAAGGAAGATCTTGAAGACTTGGTTGAGCTGGGAGGAGGTACTGTCTTGAGAAGCAAGGTAGAATTAGAAGCAAGAAGACATGAATGTGTAGCGGAACCTTCGAAGATGCTCATTGTCTACAACATTGACCCGCCACAAGGATGTAACTTGGGGGATGAACTTTCAATTCTTTGGCAGAGGCTGAATGAAGCAGAAGATTTAGCTGCTAATAATGGTTACCAAATCATTAATCACACAAGCATTCTGGAGTGCATTGCTGCTTGTAATTTGCAACATTTTCGTAGCTAA 1497 0.4142 MQNSYDTKGSEHSDHPLVAGRLGKSSLKRARTKSENLKERRKQFMPESSAYETDGLMRELKRQKNQSSADGCVRPNSTDHNNLVGSCSNLDLKSGKGPGELFRANRDDSHSSTSICSFCQSSNISEATGVMLHCANGYMVTGDNATQPNLIHVHKICFDWAPQVYFVDDAVKNLKSEVARGAKLKCSKCGLKGAALGCLVNSCRKTYHAPCAMGISTCRFDHESFLMLCPTHAHVKFPNEKLRSKKQPTQKFPALSHLPSYESNLLSPLQNDSKKVVFCGSALPDDEKVLLVNFADKVGAVVTKYWTRNVTHVIAATDENGACSRTLKVLTAILNGQWILKMDWVKACMERMTMVEEETYEISVDNQGCHGGPKAGRLRALANEPKLFSGLKFYFSGDYVSTYKEDLEDLVELGGGTVLRSKVELEARRHECVAEPSKMLIVYNIDPPQGCNLGDELSILWQRLNEAEDLAANNGYQIINHTSILECIAACNLQHFRS 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1073 498 ProSiteProfiles BRCT domain profile. 383 498 IPR001357 -
Lal11g1073 498 SUPERFAMILY BRCT domain 275 363 IPR036420 -
Lal11g1073 498 CDD BRCT_Bard1_rpt1 276 350 - -
Lal11g1073 498 Pfam PHD-like zinc-binding domain 154 232 - -
Lal11g1073 498 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 30 495 IPR031099 GO:0006281|GO:0006974
Lal11g1073 498 Gene3D BRCT domain 272 378 IPR036420 -
Lal11g1073 498 ProSiteProfiles BRCT domain profile. 276 362 IPR001357 -
Lal11g1073 498 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 30 495 - -
Lal11g1073 498 Pfam BRCT domain, a BRCA1 C-terminus domain 385 495 IPR001357 -
Lal11g1073 498 SMART BRCT_7 266 352 IPR001357 -
Lal11g1073 498 SMART BRCT_7 385 491 IPR001357 -
Lal11g1073 498 MobiDBLite consensus disorder prediction 28 47 - -
Lal11g1073 498 ProSiteProfiles Extended PHD (ePHD) domain profile. 113 233 IPR034732 -
Lal11g1073 498 SUPERFAMILY BRCT domain 387 496 IPR036420 -
Lal11g1073 498 Gene3D BRCT domain 385 491 IPR036420 -
Lal11g1073 498 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 235 IPR013083 -
Lal11g1073 498 MobiDBLite consensus disorder prediction 1 49 - -
Lal11g1073 498 Pfam BRCA1 C Terminus (BRCT) domain 276 349 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1073 Lal-Chr11 14364892 14369837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1073 306 419 Core DNA Replication Machinery Family AT4G02110 32.500 1.48e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1073 K10683 - gmx:100784883 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1073 11 14364892 14369837 Lal11g1073 11 14364892 14369837 ECH
Lal11g1073 11 14364892 14369837 Lal1g1877 1 21060942 21067201 LSH